2010
PositionMatcher: A Fast Custom-Annotation Tool for Short DNA Sequences.
Pitzer E, Kim J, Patel K, Galante P, Ohno-Machado L. PositionMatcher: A Fast Custom-Annotation Tool for Short DNA Sequences. AMIA Joint Summits On Translational Science Proceedings 2010, 2010: 25-9. PMID: 21347141, PMCID: PMC3041550.Peer-Reviewed Original ResearchParallel sequencing technologiesShort DNA sequencesTranscriptome studiesGenomic positionsDNA sequencesSequencing technologiesGenomic tagsExpression technologySequencing readsRapid AnnotationGene levelMicroarray probesShort readsCustom annotationsAbundance valuesAnnotationNovel alignment algorithmReadsBiological referenceTagsIlluminaAffymetrixSequenceMore insightProbe
2007
Automatic correspondence of tags and genes (ACTG): a tool for the analysis of SAGE, MPSS and SBS data
Galante P, Trimarchi J, Cepko C, de Souza S, Ohno-Machado L, Kuo W. Automatic correspondence of tags and genes (ACTG): a tool for the analysis of SAGE, MPSS and SBS data. Bioinformatics 2007, 23: 903-905. PMID: 17277333, DOI: 10.1093/bioinformatics/btm023.Peer-Reviewed Original Research