Mohammad Shahbazy, PhD
Postdoctoral AssociateAbout
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Postdoctoral Associate
Biography
Moh is passionate about proteomics, HLA peptidomics, bioinformatics, mass spectrometry, cancer immunotherapy, and antigen discovery research. To pursue these research interests, he obtained an MSc in analytical chemistry and bioinformatics (machine learning) strategies for biomedical data analysis toward early cancer diagnosis. Through a postgraduate research program, he received a PhD in immunology and analytical biochemistry in the Immunoproteomics Lab led by Prof Anthony (Tony) Purcell at the Biomedicine Discovery Institute, Monash University (Australia, 2023). During his PhD candidature, he endeavored to develop high-throughput mass spectrometry-based proteomics and immunopeptidomics platforms to quantitatively analyze stability profiles and PTMs in MHC/HLA-bound peptides. He developed immunoinformatics software tools for unsupervised data visualization and clustering analysis of MHC peptides to mine immunopeptidomes and explore antigen landscapes. Moreover, he developed machine learning models to predict peptide immunogenicity profiles and T-cell responses for virus-derived MHC peptides with physicochemical features and thermostability predictors to shortlist potential targets for more efficient T-cell immunotherapies and vaccines. In 2024, Moh moved to Yale University School of Medicine to join Dr Etienne Caron's Lab and continue his journey in exploring tumor-specific neoantigens by integrating cancer immunology, immunopeptidomics, quantitative proteomics workflows, proteogenomics, multi-omics strategies, and thermal immunopeptidome profiling.
Appointments
Immunobiology
Postdoctoral AssociatePrimary
Other Departments & Organizations
Education & Training
- PhD
- Monash University, Department of Biochemistry and Molecular Biology (2023)
Research
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Overview
Research interests: Antigen discovery, Cancer immunology, Cancer immunotherapy, Antigen processing and presentation mechanisms, T cells, Immunogenicity, Proteomics, Mass spectrometry, Immunopeptidomics, HLA peptidomics, Proteogenomics, Multi-omics, PTMs, Glycopeptidomics, N-/O-glyco-immunopeptidomes, Tumor-specific neoantigens, Non-small cell lung cancer, Thermal immunopeptidome profiling, Bioinformatics, Immunoinformatics, and Machine learning.
ORCID
0000-0003-2684-3092- View Lab Website
Caron Lab
Research at a Glance
Yale Co-Authors
Publications Timeline
Etienne Caron, PhD
Isabelle Leo
Publications
2025
Using TCR-CAR dual signaling for precise cancer targeting
Shahbazy M, Leo I, Faridi P, Caron E. Using TCR-CAR dual signaling for precise cancer targeting. Trends In Immunology 2025, 46: 435-437. PMID: 40368698, DOI: 10.1016/j.it.2025.04.007.Commentaries, Editorials and LettersCitationsAltmetricMeSH Keywords and Concepts
2024
Machine learning-enhanced immunopeptidomics applied to T-cell epitope discovery for COVID-19 vaccines
Kovalchik K, Hamelin D, Kubiniok P, Bourdin B, Mostefai F, Poujol R, Paré B, Simpson S, Sidney J, Bonneil É, Courcelles M, Saini S, Shahbazy M, Kapoor S, Rajesh V, Weitzen M, Grenier J, Gharsallaoui B, Maréchal L, Wu Z, Savoie C, Sette A, Thibault P, Sirois I, Smith M, Decaluwe H, Hussin J, Lavallée-Adam M, Caron E. Machine learning-enhanced immunopeptidomics applied to T-cell epitope discovery for COVID-19 vaccines. Nature Communications 2024, 15: 10316. PMID: 39609459, PMCID: PMC11604954, DOI: 10.1038/s41467-024-54734-9.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsConceptsT cell epitopesT cellsCD8+ T cell epitopesT cell immunityT cell epitope discoverySARS-CoV-2T-cell-directed vaccinationdesigning effective vaccinesB7 supertypepatient's proteomesSARS-CoV-2 variantsvaccine epitopesviral antigensspike antigenvaccine developmenteffective vaccineepitope discoveryCOVID-19 vaccinevaccineepitopesantigenic featuresOmicron variantantigenCOVID-19CD8Deciphering the HLA-E immunopeptidome with mass spectrometry: an opportunity for universal mRNA vaccines and T-cell-directed immunotherapies
Weitzen M, Shahbazy M, Kapoor S, Caron E. Deciphering the HLA-E immunopeptidome with mass spectrometry: an opportunity for universal mRNA vaccines and T-cell-directed immunotherapies. Frontiers In Immunology 2024, 15: 1442783. PMID: 39301027, PMCID: PMC11410602, DOI: 10.3389/fimmu.2024.1442783.Commentaries, Editorials and LettersCitationsAltmetricConceptsmass spectrometryHLA-EHLA moleculesT-cell-directed immunotherapyCD8+ T cellsnovel cell surface antigensnon-classical HLA-EHLA-E moleculescell surface antigenspeptides to CD8T cellsmRNA vaccinestherapeutic efficacysurface antigensimmunotherapymoleculesspectrometrytherapeutic targetimmunopeptidomepathogen-derivedCD8peptide repertoirepeptide fragmentsHLAminimal polymorphismMHCpLogics: an interactive machine learning-based tool for unsupervised data visualization and cluster analysis of immunopeptidomes
Shahbazy M, Ramarathinam S, Li C, Illing P, Faridi P, Croft N, Purcell A. MHCpLogics: an interactive machine learning-based tool for unsupervised data visualization and cluster analysis of immunopeptidomes. Briefings In Bioinformatics 2024, 25: bbae087. PMID: 38487848, PMCID: PMC10940831, DOI: 10.1093/bib/bbae087.Peer-Reviewed Original ResearchCitationsAltmetric
2023
SAPrIm, a semi-automated protocol for mid-throughput immunopeptidomics
Sian T, Goncalves G, Steele J, Shamekhi T, Bramberger L, Jin D, Shahbazy M, Purcell A, Ramarathinam S, Stoychev S, Faridi P. SAPrIm, a semi-automated protocol for mid-throughput immunopeptidomics. Frontiers In Immunology 2023, 14: 1107576. PMID: 37334365, PMCID: PMC10272402, DOI: 10.3389/fimmu.2023.1107576.Peer-Reviewed Original ResearchCitationsAltmetricBenchmarking Bioinformatics Pipelines in Data-Independent Acquisition Mass Spectrometry for Immunopeptidomics
Shahbazy M, Ramarathinam S, Illing P, Jappe E, Faridi P, Croft N, Purcell A. Benchmarking Bioinformatics Pipelines in Data-Independent Acquisition Mass Spectrometry for Immunopeptidomics. Molecular & Cellular Proteomics 2023, 22: 100515. PMID: 36796644, PMCID: PMC10060114, DOI: 10.1016/j.mcpro.2023.100515.Peer-Reviewed Original ResearchCitationsAltmetricImmunolyser: A web-based computational pipeline for analysing and mining immunopeptidomic data
Munday P, Fehring J, Revote J, Pandey K, Shahbazy M, Scull K, Ramarathinam S, Faridi P, Croft N, Braun A, Li C, Purcell A. Immunolyser: A web-based computational pipeline for analysing and mining immunopeptidomic data. Computational And Structural Biotechnology Journal 2023, 21: 1678-1687. PMID: 36890882, PMCID: PMC9988424, DOI: 10.1016/j.csbj.2023.02.033.Peer-Reviewed Original ResearchCitationsAltmetric
2019
FTICR mass spectrometry-based multivariate analysis to explore distinctive metabolites and metabolic pathways: A comprehensive bioanalytical strategy toward time-course metabolic profiling of Thymus vulgaris plants responding to drought stress
Shahbazy M, Moradi P, Ertaylan G, Zahraei A, Kompany-Zareh M. FTICR mass spectrometry-based multivariate analysis to explore distinctive metabolites and metabolic pathways: A comprehensive bioanalytical strategy toward time-course metabolic profiling of Thymus vulgaris plants responding to drought stress. Plant Science 2019, 290: 110257. PMID: 31779919, DOI: 10.1016/j.plantsci.2019.110257.Peer-Reviewed Original ResearchCitationsAltmetric
2017
A chemosensor array for the colorimetric identification of some carboxylic acids in human urine samples
Sheini A, Khajehsharifi H, Shahbazy M, Kompany-Zareh M. A chemosensor array for the colorimetric identification of some carboxylic acids in human urine samples. Sensors And Actuators B Chemical 2017, 242: 288-298. DOI: 10.1016/j.snb.2016.11.008.Peer-Reviewed Original ResearchCitationsA proposed mechanism to form nanosized Mn oxides from the decomposition of β-cyclodextrin-Mn complex: Toward nanosized water-splitting catalysts with special morphology
Najafpour M, Kaboudin B, Mostafalu R, Shahbazy M, Safdari R, Kompany-Zareh M. A proposed mechanism to form nanosized Mn oxides from the decomposition of β-cyclodextrin-Mn complex: Toward nanosized water-splitting catalysts with special morphology. International Journal Of Hydrogen Energy 2017, 42: 11187-11198. DOI: 10.1016/j.ijhydene.2017.03.005.Peer-Reviewed Original ResearchCitations
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