Software for Free Download

Gene Array Data Analysis Programs Developed in Hongyu's Lab of Statistical Genetics

• BCLUST. A program to assess reliability of gene clusters from expression data by using consensus tree and bootstrap resampling method. Readme (PDF). Related Paper.
• QAnalyzer 1.0. Statistical analysis of QuantArray data, including dye effect adjustment and ANOVA analysis. ReadMe (PDF). Additional Link: QAnalyzer 1.0 Linux download.
• GProcessor 3.0. Statistical analysis of GenePix data, including dye effect adjustment and ANOVA analysis. ReadMe (PDF). Additional Link: GProcessor 3.0 Linux download.

More Programs Developed in Hongyu's Lab.

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Microarray Data Analysis Software From Other Sources

• Some R Packages for Microarray Analysis (Terry Speed's Group at UC Berkeley)
• SAM: Significance Analysis of Microarrays (Tibshirani's Lab at Stanford University)
• Cluster (Gavin Sherlock at Stanford University)
• ScanAnalyze, Cluster and TreeView (Mike Eisen Lab)
• ANOVA Programs for Microarray Data (The Churchill Group at the Jackson Laboratory)
• J-Express (MolMine)