Featured Publications
Towards User-centered Corpus Development: Lessons Learnt from Designing and Developing MedTator.
He H, Fu S, Wang L, Wen A, Liu S, Moon S, Miller K, Liu H. Towards User-centered Corpus Development: Lessons Learnt from Designing and Developing MedTator. AMIA Annual Symposium Proceedings 2023, 2022: 532-541. PMID: 37128369, PMCID: PMC10148300.Peer-Reviewed Original ResearchConceptsAnnotation toolWeb-based annotation toolNatural language processing systemsCorpus developmentUser-centered interfacesData security concernsLanguage processing systemTarget end usersAnnotation taskClinical NLPAnnotation processEnd usersSecurity concernsLightweight solutionPowerful featuresAdvanced featuresProcessing systemCore taskTool developmentTaskCorpusAnnotatorsToolNLPUsers
2023
The IMPACT framework and implementation for accessible in silico clinical phenotyping in the digital era
Wen A, He H, Fu S, Liu S, Miller K, Wang L, Roberts K, Bedrick S, Hersh W, Liu H. The IMPACT framework and implementation for accessible in silico clinical phenotyping in the digital era. Npj Digital Medicine 2023, 6: 132. PMID: 37479735, PMCID: PMC10362064, DOI: 10.1038/s41746-023-00878-9.Peer-Reviewed Original ResearchAlgorithm development processEase of adoptionDigital health applicationsSoftware applicationsPhenotyping tasksExample implementationInterested usersReusable toolsManual abstractionSuch tasksDevelopment processHealth applicationsDigital eraFoundational requirementCost requirementsTaskImplementationSilico meansFrameworkPotential solutionsRequirementsUsersDatasetAbstractionApplications
2022
MedTator: a serverless annotation tool for corpus development
He H, Fu S, Wang L, Liu S, Wen A, Liu H. MedTator: a serverless annotation tool for corpus development. Bioinformatics 2022, 38: 1776-1778. PMID: 34983060, PMCID: PMC10060696, DOI: 10.1093/bioinformatics/btab880.Peer-Reviewed Original ResearchConceptsAnnotation toolInteractive user interfaceApache 2.0 licenseDocument annotationUser interfaceAnnotation taskSource codeAdvanced featuresDifficulty of useAnnotation corpusCorpus developmentCorpus annotationCore stepsSupplementary dataVariety of needsAnnotationClinical research applicationsSummarizationResearch applicationsToolConsiderable timeTaskBioinformaticsTutorialCode