Ritornello: high fidelity control-free chromatin immunoprecipitation peak calling
Stanton KP, Jin J, Lederman RR, Weissman SM, Kluger Y. Ritornello: high fidelity control-free chromatin immunoprecipitation peak calling. Nucleic Acids Research 2017, 45: e173-e173. PMID: 28981893, PMCID: PMC5716106, DOI: 10.1093/nar/gkx799.Peer-Reviewed Original ResearchMeSH KeywordsAlgorithmsArtifactsBinding SitesChromatin ImmunoprecipitationDNAHigh-Throughput Nucleotide SequencingNucleotide MotifsSequence Analysis, DNASoftwareTranscription FactorsConceptsChIP-seqNext-generation high-throughput DNA sequencing technologiesHigh-throughput DNA sequencing technologiesGenome-wide localizationGenome-wide scaleTF-binding sitesTranscription factor bindingDNA sequencing technologiesENCODE consortiumResultant readsChromatin immunoprecipitationReference genomeDiverse biological effectsModification eventsFactor bindingOmics techniquesSequencing technologiesOmics experimentsSequencing costsWide localizationPeak callingChip targetArtifactual peaksPeak callersBiological effects