2010
MU2A—reconciling the genome and transcriptome to determine the effects of base substitutions
Garla V, Kong Y, Szpakowski S, Krauthammer M. MU2A—reconciling the genome and transcriptome to determine the effects of base substitutions. Bioinformatics 2010, 27: 416-418. PMID: 21149339, PMCID: PMC3031033, DOI: 10.1093/bioinformatics/btq658.Peer-Reviewed Original ResearchConceptsProtein productsSequence variantsNext-generation sequencing technologiesGenomic sequence variantsTranscript librariesGenomic coordinatesGenomic positionsReference genomeSequencing technologiesSequence variationGenomeGenomic variantsBase substitutionsVariant annotationTranscriptomeTranscriptsVariantsAnnotationMapping
2003
A Protein Interaction Map of Drosophila melanogaster
Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, Li Y, Hao YL, Ooi CE, Godwin B, Vitols E, Vijayadamodar G, Pochart P, Machineni H, Welsh M, Kong Y, Zerhusen B, Malcolm R, Varrone Z, Collis A, Minto M, Burgess S, McDaniel L, Stimpson E, Spriggs F, Williams J, Neurath K, Ioime N, Agee M, Voss E, Furtak K, Renzulli R, Aanensen N, Carrolla S, Bickelhaupt E, Lazovatsky Y, DaSilva A, Zhong J, Stanyon CA, Finley RL, White KP, Braverman M, Jarvie T, Gold S, Leach M, Knight J, Shimkets RA, McKenna MP, Chant J, Rothberg JM. A Protein Interaction Map of Drosophila melanogaster. Science 2003, 302: 1727-1736. PMID: 14605208, DOI: 10.1126/science.1090289.Peer-Reviewed Original ResearchMeSH KeywordsAnimalsCalciumCell CycleCell DifferentiationCloning, MolecularComputational BiologyDNA, ComplementaryDrosophila melanogasterDrosophila ProteinsErbB ReceptorsGenes, InsectImmunity, InnateMathematicsModels, StatisticalPhotoreceptor Cells, InvertebrateProtein BindingProtein Interaction MappingProteomeRNA SplicingRNA, MessengerSignal TransductionTranscription, GeneticTwo-Hybrid System TechniquesConceptsProtein interaction mapsDrosophila melanogasterDraft mapComplementary DNA librarySystems biology modelingHigh-confidence mapMulticellular organismsFly proteomeMultiprotein complexesDNA libraryInteraction mapPathway componentsLevels of organizationKnown pathwaysExtended pathwaysHuman biologyMelanogasterModel systemProteinPathwayProteomeComputational methodsTranscriptsOrganismsBiology