2017
A Likelihood Approach for Real-Time Calibration of Stochastic Compartmental Epidemic Models
Zimmer C, Yaesoubi R, Cohen T. A Likelihood Approach for Real-Time Calibration of Stochastic Compartmental Epidemic Models. PLOS Computational Biology 2017, 13: e1005257. PMID: 28095403, PMCID: PMC5240920, DOI: 10.1371/journal.pcbi.1005257.Peer-Reviewed Original ResearchConceptsParameter estimationStochastic modelLinear noise approximationStochastic transmission-dynamic modelEnsemble Kalman filter methodReal-time parameter estimationKey epidemic parametersParticle filtering methodInfectious individualsStochastic systemsCompartmental epidemic modelLikelihood approximationMultiple shootingNoise approximationBenchmark methodsEpidemic modelPoisson observationsKalman filter methodUnobserved numberAccurate estimatesEpidemic parametersLikelihood approachFiltering methodDynamic modelApproximation
2014
The Impact of Antiretroviral Therapy on Mortality in HIV Positive People during Tuberculosis Treatment: A Systematic Review and Meta-Analysis
Odone A, Amadasi S, White RG, Cohen T, Grant AD, Houben RM. The Impact of Antiretroviral Therapy on Mortality in HIV Positive People during Tuberculosis Treatment: A Systematic Review and Meta-Analysis. PLOS ONE 2014, 9: e112017. PMID: 25391135, PMCID: PMC4229142, DOI: 10.1371/journal.pone.0112017.Peer-Reviewed Original ResearchMeSH KeywordsAnti-Retroviral AgentsComorbidityData Interpretation, StatisticalHIV InfectionsHIV SeropositivityHumansRisk FactorsTreatment OutcomeTuberculosisConceptsHIV-positive peopleAntiretroviral therapyTB treatmentTuberculosis treatmentSystematic reviewHIV-positive TB casesCoverage of ARTRisk of deathMain outcome measuresOutcomes of interestTB casesDual epidemicsTB therapyRelative riskOutcome measuresPooled estimatesStudy populationProportion of individualsFatality ratioPositive peopleMeta-AnalysisART statusClinical settingManual searchMortality