2008
Issues in the Design of a Pilot Concept-Based Query Interface for the Neuroinformatics Information Framework
Marenco L, Li Y, Martone ME, Sternberg PW, Shepherd GM, Miller PL. Issues in the Design of a Pilot Concept-Based Query Interface for the Neuroinformatics Information Framework. Neuroinformatics 2008, 6: 229-239. PMID: 18953674, PMCID: PMC2664632, DOI: 10.1007/s12021-008-9035-9.Peer-Reviewed Original ResearchConceptsNeuroscience Information FrameworkQuery interfaceBiomedical information retrievalInformation frameworkInformation retrievalResource registryDocument archivesBiomedical vocabulariesSingle interfaceStandardized vocabularyCurrent versionDetailed exampleInterfaceResourcesFrameworkOntologyPilot conceptVocabularyRetrievalIssuesCertain lessonsBackground issuesSearchArchivesPrimary resources
2007
YPED: A Web-Accessible Database System for Protein Expression Analysis
Shifman MA, Li Y, Colangelo CM, Stone KL, Wu TL, Cheung KH, Miller PL, Williams KR. YPED: A Web-Accessible Database System for Protein Expression Analysis. Journal Of Proteome Research 2007, 6: 4019-4024. PMID: 17867667, PMCID: PMC3863627, DOI: 10.1021/pr070325f.Peer-Reviewed Original ResearchConceptsWeb-accessible software systemWeb-accessible database systemYale Protein Expression DatabaseOpen source systemsSecure web interfaceSoftware systemsDatabase systemsWeb interfaceSource codeExplorer systemExpression databaseProtein Expression DatabaseSource systemEdu/Sample summariesGel imagesTrans-Proteomic Pipeline
2000
An integrated web interface for large-scale characterization of sequence data
Cheung K, Kumar A, Snyder M, Miller P. An integrated web interface for large-scale characterization of sequence data. Functional & Integrative Genomics 2000, 1: 70-75. PMID: 11793223, DOI: 10.1007/s101420000004.Peer-Reviewed Original ResearchMeSH KeywordsClinical Laboratory Information SystemsComputational BiologyDatabases, GeneticDatabases, ProteinDNA Transposable ElementsDNA, FungalGene Expression ProfilingGenomeGenome, FungalInternetMutagenesis, InsertionalOpen Reading FramesSaccharomyces cerevisiaeSequence Analysis, DNASequence Homology, Nucleic AcidSoftwareUser-Computer InterfaceConceptsWeb interfaceWeb front endGenomic data processingData filesLarge-scale genome projectsIndependent software programsSet of programsMultiple directoriesData directoryData processingRaw dataTransposon insertion eventsSoftware programFilesFront endDirectoryEfficient protocolLarge amountInterfaceLarge numberGeneral approachUsersSetDownloadNavigation
1999
Organization of Heterogeneous Scientific Data Using the EAV/CR Representation
Nadkarni P, Marenco L, Chen R, Skoufos E, Shepherd G, Miller P. Organization of Heterogeneous Scientific Data Using the EAV/CR Representation. Journal Of The American Medical Informatics Association 1999, 6: 478-493. PMID: 10579606, PMCID: PMC61391, DOI: 10.1136/jamia.1999.0060478.Peer-Reviewed Original ResearchConceptsEAV/CRHeterogeneous scientific dataPhysical database schemaStorage of dataInterobject relationshipsDatabase schemaHeterogeneous dataMedical domainComplex objectsScientific domainsClinical patient recordsSchemaBiomedical databasesRepresentationScientific dataPatient recordsSuch purposesDatabaseValue representationDomainObjectsParadigmDataOlfactory Receptor Database: a database of the largest eukaryotic gene family
Skoufos E, Healy M, Singer M, Nadkarni P, Miller P, Shepherd G. Olfactory Receptor Database: a database of the largest eukaryotic gene family. Nucleic Acids Research 1999, 27: 343-345. PMID: 9847223, PMCID: PMC148178, DOI: 10.1093/nar/27.1.343.Peer-Reviewed Original ResearchNeuronal database integration: the Senselab EAV data model.
Marenco L, Nadkarni P, Skoufos E, Shepherd G, Miller P. Neuronal database integration: the Senselab EAV data model. AMIA Annual Symposium Proceedings 1999, 102-6. PMID: 10566329, PMCID: PMC2232788.Peer-Reviewed Original Research