2008
Issues in the Design of a Pilot Concept-Based Query Interface for the Neuroinformatics Information Framework
Marenco L, Li Y, Martone ME, Sternberg PW, Shepherd GM, Miller PL. Issues in the Design of a Pilot Concept-Based Query Interface for the Neuroinformatics Information Framework. Neuroinformatics 2008, 6: 229-239. PMID: 18953674, PMCID: PMC2664632, DOI: 10.1007/s12021-008-9035-9.Peer-Reviewed Original ResearchConceptsNeuroscience Information FrameworkQuery interfaceBiomedical information retrievalInformation frameworkInformation retrievalResource registryDocument archivesBiomedical vocabulariesSingle interfaceStandardized vocabularyCurrent versionDetailed exampleInterfaceResourcesFrameworkOntologyPilot conceptVocabularyRetrievalIssuesCertain lessonsBackground issuesSearchArchivesPrimary resources
2001
Domain-constrained Generation of Clinical Condition Sets to Help Test Computer-based Clinical Guidelines
Miller P. Domain-constrained Generation of Clinical Condition Sets to Help Test Computer-based Clinical Guidelines. Journal Of The American Medical Informatics Association 2001, 8: 131-145. PMID: 11230382, PMCID: PMC134553, DOI: 10.1136/jamia.2001.0080131.Peer-Reviewed Original Research
1998
Tools for Immunization Guideline Knowledge Maintenance II. Automated Web-Based Generation of User-Customized Test Cases
Miller P, Frawley S, Brandt C, Sayward F. Tools for Immunization Guideline Knowledge Maintenance II. Automated Web-Based Generation of User-Customized Test Cases. Journal Of Biomedical Informatics 1998, 31: 190-208. PMID: 9628750, DOI: 10.1006/cbmr.1998.1471.Peer-Reviewed Original ResearchManaging Attribute–Value Clinical Trials Data Using the ACT/DB Client–Server Database System
Nadkarni P, Brandt C, Frawley S, Sayward F, Einbinder R, Zelterman D, Schacter L, Miller P. Managing Attribute–Value Clinical Trials Data Using the ACT/DB Client–Server Database System. Journal Of The American Medical Informatics Association 1998, 5: 139-151. PMID: 9524347, PMCID: PMC61285, DOI: 10.1136/jamia.1998.0050139.Peer-Reviewed Original ResearchConceptsClient-server database systemsReuse of parametersData entryOracle serverDatabase applicationsDatabase systemsObject dataUNIX platformsDictionary searchData typesInitial deploymentLogical groupingPurposes of displaySuch dataStandard reportPilot useServerIndexingAnalysis programMachineDeploymentPlatformReuseClientsIssues in accommodating national changes and local variation in a computer-based guideline for childhood immunization and in related knowledge maintenance tools.
Miller P, Frawley S, Sayward F. Issues in accommodating national changes and local variation in a computer-based guideline for childhood immunization and in related knowledge maintenance tools. AMIA Annual Symposium Proceedings 1998, 563-7. PMID: 9929282, PMCID: PMC2232304.Peer-Reviewed Original ResearchConceptsChildhood immunizationNational recommendationsNew national recommendationsClinical practice guidelinesIndian Health ServiceVaccine seriesComputer-based guidelinePractice guidelinesPractice variationImmunization registryHealth servicesImmunizationUS Indian Health ServiceIMM/ServeGuidelinesNational changesRegistry
1997
Combining Tabular, Rule-Based, and Procedural Knowledge in Computer-Based Guidelines for Childhood Immunization
Miller P, Frawley S, Sayward F, Yasnoff W, Duncan L, Fleming D. Combining Tabular, Rule-Based, and Procedural Knowledge in Computer-Based Guidelines for Childhood Immunization. Journal Of Biomedical Informatics 1997, 30: 211-231. PMID: 9281329, DOI: 10.1006/cbmr.1997.1445.Peer-Reviewed Original ResearchMeSH KeywordsAge FactorsArtificial IntelligenceChickenpox VaccineChildDatabase Management SystemsDecision TreesDiphtheria-Tetanus-Pertussis VaccineForecastingHaemophilus VaccinesHepatitis B VaccinesHumansImmunizationImmunization ScheduleMeasles VaccineMeasles-Mumps-Rubella VaccineMedical Records Systems, ComputerizedMumps VaccinePoliovirus Vaccine, InactivatedPoliovirus Vaccine, OralPractice Guidelines as TopicReminder SystemsRubella VaccineSoftware DesignTime FactorsVaccinationVaccines, Combined
1995
Internet-based Support for Bioscience Research: A Collaborative Genome center for Human Chromosome 12
Miller P, Nadkarni P, Kidd K, Cheung K, Ward D, Banks A, Bray-Ward P, Cupelli L, Herdman V, Marondel I, Montcomery K, Renault B, Yoon S, Krauter K, Kucherlapati R. Internet-based Support for Bioscience Research: A Collaborative Genome center for Human Chromosome 12. Journal Of The American Medical Informatics Association 1995, 2: 351-364. PMID: 8581551, PMCID: PMC116278, DOI: 10.1136/jamia.1995.96157828.Peer-Reviewed Original ResearchMeSH KeywordsChromosome MappingChromosomes, Artificial, YeastChromosomes, Human, Pair 12Computer Communication NetworksConnecticutData DisplayDatabases, FactualGenetic MarkersGenome, HumanHumansInterinstitutional RelationsLocal Area NetworksModels, GeneticNew York CityOrganizational ObjectivesSoftware DesignSystems IntegrationUser-Computer InterfaceConceptsUser-friendly front endInternet-based supportExternal databasesMedical informaticsGenome CenterGenome informaticsDatabase programMapping communityCandidate mapsInformaticsAssembly toolsAreas of bioscienceFront endDatabaseServerSybaseSuch supportCase studySetToolBioscience researchCertain issuesClientsTechnologySupportLessons Learned from a Pilot Implementation of the UMLS Information Sources Map
Miller P, Frawley S, Wright L, Roderer N, Powsner S. Lessons Learned from a Pilot Implementation of the UMLS Information Sources Map. Journal Of The American Medical Informatics Association 1995, 2: 102-115. PMID: 7743314, PMCID: PMC116244, DOI: 10.1136/jamia.1995.95261904.Peer-Reviewed Original ResearchConceptsWide Area Information ServersKnowledge baseUnified Medical Language System (UMLS) projectClient-server softwareInformation Sources MapNavigational toolsBiomedical questionsCross-platform accessClient-server modeSoftware design issuesInformation sourcesElectronic information resourcesInformation serverHeterogeneous sourcesInformation resourcesAutomatic connectionComplexity of developmentMedical usersSystem projectUsersDesign issuesPilot implementationPilot systemSignificant complexityDifferent versions
1993
Automated Integration of External Databases: A Knowledge-Based Approach to Enhancing Rule-Based Expert Systems
Berman L, Cullen M, Miller P. Automated Integration of External Databases: A Knowledge-Based Approach to Enhancing Rule-Based Expert Systems. Journal Of Biomedical Informatics 1993, 26: 230-241. PMID: 8325003, DOI: 10.1006/cbmr.1993.1016.Peer-Reviewed Original ResearchConceptsExpert system knowledge baseSystem knowledge baseKnowledge baseKnowledge basesPrototype systemLarge knowledge basesSuch knowledge basesExpert system applicationsKnowledge-based methodsDecision support aidRetrieval toolsBiomedical domainExternal databasesExpert systemSupport aidsSystem applicationsOnline databasesDatabaseSystemImplementationIntegrationRulesToolDataApplications
1992
Comparing machine-independent versus machine-specific parallelization of a software platform for biological sequence comparison
Miller P, Nadkarni P, Pearson W. Comparing machine-independent versus machine-specific parallelization of a software platform for biological sequence comparison. Bioinformatics 1992, 8: 167-175. PMID: 1591612, DOI: 10.1093/bioinformatics/8.2.167.Peer-Reviewed Original ResearchConceptsDatabase of sequencesBiological sequence comparisonParallel computationMachine-independent parallel programming languageParallel programming languageHypercube parallel computerProgramming languageSoftware platformParallel computersParallel machinesExpressive powerBiological sequencesParallelizationPlatform programComputationModest sacrificeBenchmark testsLogicDatabaseCase studyComputerPortabilityMachineLindaRelative advantages
1991
Parallelizing genetic linkage analysis: A case study for applying parallel computation in molecular biology
Miller P, Nadkarni P, Gelernter J, Carriero N, Pakstis A, Kidd K. Parallelizing genetic linkage analysis: A case study for applying parallel computation in molecular biology. Journal Of Biomedical Informatics 1991, 24: 234-248. PMID: 1868693, DOI: 10.1016/0010-4809(91)90046-y.Peer-Reviewed Original ResearchMeSH KeywordsChromosome MappingForecastingGenetic LinkageLod ScoreMolecular BiologyProgramming LanguagesSoftwareSoftware DesignConceptsParallel computersSequential programsMachine-independent parallel programming languageParallel programming languageDifferent parallel machinesLengthy computation timeParallel programsProgramming languageAvailable processorsDifferent processorsParallel computationParallel machinesSequential versionParallel versionComputational loadComputation timePerformance benchmarksComputerProcessorsCase studyDifferent piecesIterative programsLINKMAPComputationParallel formsParallel computation and FASTA: confronting the problem of parallel database search for a fast sequence comparison algorithm
Miller P, Nadkarni P, Carriero N. Parallel computation and FASTA: confronting the problem of parallel database search for a fast sequence comparison algorithm. Bioinformatics 1991, 7: 71-78. PMID: 2004277, DOI: 10.1093/bioinformatics/7.1.71.Peer-Reviewed Original ResearchMeSH KeywordsAlgorithmsAmino Acid SequenceComputer SystemsMathematical ComputingMolecular Sequence DataProgramming LanguagesSoftware DesignConceptsSequence comparison algorithmAmount of computationMachine-independent parallel programming languageComparison algorithmsDisk I/OParallel programming languageParallel program runsO bottleneck problemDifferent parallel machinesBiological sequence comparisonNumber of processorsTime-consuming computationProgramming languageParallelization strategyParallel computationParallel machinesProgram design strategiesProgram runBottleneck problemFASTA algorithmFASTAAlgorithmComputationBottleneckGeneral problem
1990
Knowledge-based radiologic image retrieval using axes of clinical relevance
Cohn A, Miller P, Fisher P, Mutalik P, Swett H. Knowledge-based radiologic image retrieval using axes of clinical relevance. Journal Of Biomedical Informatics 1990, 23: 199-221. PMID: 2350958, DOI: 10.1016/0010-4809(90)90017-7.Peer-Reviewed Original ResearchMeSH KeywordsExpert SystemsHospital Information SystemsRadiology Information SystemsSoftware DesignSubject HeadingsUser-Computer InterfaceConceptsPrototype knowledge-based systemKnowledge-based systemIntelligent retrievalImage retrievalDomain knowledgeSearch spaceSearch processUser groupsSearch constraintsHeuristicsRetrievalSearch strategyImagesClinicians' needsRadiographic imagesSearchProbable relevanceSystemDomainConstraintsSpecific caseAttributesPreliminary testsKnowledgeNeedA parallel software architecture for building intelligent medical monitors
Factor M, Sittig D, Cohn A, Gelernter D, Miller P, Rosenbaum S. A parallel software architecture for building intelligent medical monitors. International Journal Of Clinical Monitoring And Computing 1990, 7: 117-128. PMID: 2373942, DOI: 10.1007/bf01724205.Peer-Reviewed Original ResearchConceptsParallel software architectureSoftware architectureParallel computing hardwareMedical monitorNumber of devicesProcess trellisParallel programmingApplication programmersHigh-level summaryIntelligent monitorComputing hardwarePerformance gainsParallel structureArchitectureData calculationSymbolic classificationCardiovascular monitorsProgrammersMonitorHardwareProgrammingPreliminary testingTrellisComplexityClassification
1987
Hydra
Miller P, Blumenfrucht S, Rose J, Rothschild M, Swett H, Weltin G, Mars N. Hydra. Medical Decision Making 1987, 7: 12-21. PMID: 3807686, DOI: 10.1177/0272989x8700700106.Peer-Reviewed Original Research