2008
Issues in the Design of a Pilot Concept-Based Query Interface for the Neuroinformatics Information Framework
Marenco L, Li Y, Martone ME, Sternberg PW, Shepherd GM, Miller PL. Issues in the Design of a Pilot Concept-Based Query Interface for the Neuroinformatics Information Framework. Neuroinformatics 2008, 6: 229-239. PMID: 18953674, PMCID: PMC2664632, DOI: 10.1007/s12021-008-9035-9.Peer-Reviewed Original ResearchConceptsNeuroscience Information FrameworkQuery interfaceBiomedical information retrievalInformation frameworkInformation retrievalResource registryDocument archivesBiomedical vocabulariesSingle interfaceStandardized vocabularyCurrent versionDetailed exampleInterfaceResourcesFrameworkOntologyPilot conceptVocabularyRetrievalIssuesCertain lessonsBackground issuesSearchArchivesPrimary resources
2001
Integration of Multidisciplinary Sensory Data
Miller P, Nadkarni P, Singer M, Marenco L, Hines M, Shepherd G. Integration of Multidisciplinary Sensory Data. Journal Of The American Medical Informatics Association 2001, 8: 34-48. PMID: 11141511, PMCID: PMC134590, DOI: 10.1136/jamia.2001.0080034.Peer-Reviewed Original ResearchConceptsNeuroinformatics researchFlexible data modelDiverse heterogeneous dataHuman Brain ProjectNew informatics technologiesHeterogeneous dataData modelSensory dataRelated toolsInformatics technologiesBrain ProjectBuilding databaseSingle unifying frameworkUnifying frameworkProject approachIntegrationComputer model
2000
Exploring Performance Issues for a Clinical Database Organized Using an Entity-Attribute-Value Representation
Chen R, Nadkarni P, Marenco L, Levin F, Erdos J, Miller P. Exploring Performance Issues for a Clinical Database Organized Using an Entity-Attribute-Value Representation. Journal Of The American Medical Informatics Association 2000, 7: 475-487. PMID: 10984467, PMCID: PMC79043, DOI: 10.1136/jamia.2000.0070475.Peer-Reviewed Original ResearchMeSH KeywordsDatabase Management SystemsDatabases as TopicDatabases, FactualInformation Storage and RetrievalMicrobiologyPilot ProjectsConceptsEAV/CRDatabase schemaSQL statementsDatabase modelDatabase sizeSystem memoryQuery execution timeHeterogeneous biomedical dataSimple SQL statementsQuery efficiencyQuery performancePowerful hardwareQuery strategyEntity attributesDatabase queriesDatabase representationBiomedical dataExecution timeQueriesMore memoryPerformance issuesSchemaValue representationRepresentationCR modelPathMaster
Mattie M, Staib L, Stratmann E, Tagare H, Duncan J, Miller P. PathMaster. Journal Of The American Medical Informatics Association 2000, 7: 404-415. PMID: 10887168, PMCID: PMC61444, DOI: 10.1136/jamia.2000.0070404.Peer-Reviewed Original ResearchConceptsDigital image databaseText-based descriptionsFeature extraction routineImage databaseIndexing methodSearch enginesFeature extractionCytopathology imagesCross-reference analysisExtraction routinesImagesPrognostic processInformation contentDescriptorsIndividual cell characteristicsDatabaseCell descriptorsRoutinesRecognition trialsEngineIndex dataExtractionMethodDescriptionIMM/Scrub: A Domain-Specific Tool for the Deduplication of Vaccination History Records in Childhood Immunization Registries
Miller P, Frawley S, Sayward F. IMM/Scrub: A Domain-Specific Tool for the Deduplication of Vaccination History Records in Childhood Immunization Registries. Journal Of Biomedical Informatics 2000, 33: 126-143. PMID: 10854120, DOI: 10.1006/cbmr.1999.1534.Peer-Reviewed Original ResearchMeSH KeywordsChildDatabases, FactualHumansMedical Records Systems, ComputerizedPilot ProjectsRegistriesSoftwareVaccinationConceptsImmunization registryAcademic medical centerDomain-specific toolsData cleaning processImmunization databaseVaccine seriesCombination vaccinesMedical CenterHistory recordsPreliminary experienceIMM/Dose numberDosesDoseRegistryDeduplicationPilot implementationDifferent preparationsPilot toolAdditional assistanceVaccineForecasting programImplementationNumber of factors
1999
Exploring three approaches for handling incomplete patient histories in a computer-based guideline for childhood immunization.
Miller P, Frawley S, Sayward F. Exploring three approaches for handling incomplete patient histories in a computer-based guideline for childhood immunization. AMIA Annual Symposium Proceedings 1999, 878-82. PMID: 10566486, PMCID: PMC2232702.Peer-Reviewed Original Research
1998
Database tools for integrating and searching membrane property data correlated with neuronal morphology
Mirsky J, Nadkarni P, Healy M, Miller P, Shepherd G. Database tools for integrating and searching membrane property data correlated with neuronal morphology. Journal Of Neuroscience Methods 1998, 82: 105-121. PMID: 10223520, DOI: 10.1016/s0165-0270(98)00049-1.Peer-Reviewed Original ResearchConceptsDatabase toolsWeb resourcesSearch toolsCritical problemUsersSequence databasesSimple canonical modelFunctional operationDatabaseToolSearchDifferent neuronsInternetAnnotationEquivalent compartmentsModelersDataProperty dataCanonical modelDifferent typesInformationState of acceptanceResourcesVehiclesProperty space
1996
ModelDB: An Environment for Running and Storing Computational Models and Their Results Applied to Neuroscience
Peterson B, Healy M, Nadkarni P, Miller P, Shepherd G. ModelDB: An Environment for Running and Storing Computational Models and Their Results Applied to Neuroscience. Journal Of The American Medical Informatics Association 1996, 3: 389-398. PMID: 8930855, PMCID: PMC116323, DOI: 10.1136/jamia.1996.97084512.Peer-Reviewed Original ResearchConceptsWorld Wide Web interfaceCluster of databasesHuman Brain ProjectWeb interfaceComputational modelIndividual databasesSmall databaseDatabase developmentBrain ProjectComplex informationRelated databasesFormal mannerVast quantitiesSystem functionDiverse sourcesDatabaseInformationWebProjectResearch groupsInitial approachPilot projectIssuesGeneral issuesTechnology
1995
Lessons Learned from a Pilot Implementation of the UMLS Information Sources Map
Miller P, Frawley S, Wright L, Roderer N, Powsner S. Lessons Learned from a Pilot Implementation of the UMLS Information Sources Map. Journal Of The American Medical Informatics Association 1995, 2: 102-115. PMID: 7743314, PMCID: PMC116244, DOI: 10.1136/jamia.1995.95261904.Peer-Reviewed Original ResearchConceptsWide Area Information ServersKnowledge baseUnified Medical Language System (UMLS) projectClient-server softwareInformation Sources MapNavigational toolsBiomedical questionsCross-platform accessClient-server modeSoftware design issuesInformation sourcesElectronic information resourcesInformation serverHeterogeneous sourcesInformation resourcesAutomatic connectionComplexity of developmentMedical usersSystem projectUsersDesign issuesPilot implementationPilot systemSignificant complexityDifferent versions