2005
Correlated Evolutionary Pressure at Interacting Transcription Factors and DNA Response Elements Can Guide the Rational Engineering of DNA Binding Specificity
Raviscioni M, Gu P, Sattar M, Cooney AJ, Lichtarge O. Correlated Evolutionary Pressure at Interacting Transcription Factors and DNA Response Elements Can Guide the Rational Engineering of DNA Binding Specificity. Journal Of Molecular Biology 2005, 350: 402-415. PMID: 15946684, DOI: 10.1016/j.jmb.2005.04.054.Peer-Reviewed Original ResearchMeSH KeywordsAnimalsBiological EvolutionComputational BiologyDNADNA Mutational AnalysisDNA-Binding ProteinsEntropyEvolution, MolecularGenomicsHumansModels, GeneticModels, StatisticalMutationNucleic Acid ConformationPhylogenyProtein BindingProtein EngineeringReceptors, Cytoplasmic and NuclearReceptors, EstrogenResponse ElementsSoftwareThermodynamicsTranscription FactorsConceptsDNA binding specificityTranscription factorsBinding specificityEvolutionary importanceEvolutionary pressureResponse elementInteracting Transcription FactorsRational engineeringRelative evolutionary importanceProtein-DNA interfaceProtein-DNA interactionsTranscription factor proteinsDNA response elementsAmino acid residuesNuclear hormone receptorsTranscriptional regulatorsEvolutionary traceImportant residuesGene expressionRecognition codeMolecular mechanismsAcid residuesFactor proteinProtein residuesLRH-1
2003
Expression of the Orphan Nuclear Receptor, Germ Cell Nuclear Factor, in Mouse Gonads and Preimplantation Embryos1
Lan ZJ, Gu P, Xu X, Cooney AJ. Expression of the Orphan Nuclear Receptor, Germ Cell Nuclear Factor, in Mouse Gonads and Preimplantation Embryos1. Biology Of Reproduction 2003, 68: 282-289. PMID: 12493724, DOI: 10.1095/biolreprod.102.008151.Peer-Reviewed Original ResearchMeSH KeywordsAmino Acid SequenceAnimalsAntibody SpecificityBase SequenceBlastocystDNADNA-Binding ProteinsFemaleGene Expression Regulation, DevelopmentalImmunohistochemistryIn Vitro TechniquesMaleMiceMice, Inbred C57BLMolecular Sequence DataNuclear Receptor Subfamily 6, Group A, Member 1OocytesOogenesisOvaryPregnancyReceptors, Cytoplasmic and NuclearSpermatogenesisSpermatozoaTestisConceptsGerm cell nuclear factorGCNF proteinMouse gonadsEmbryonic developmentZygotic gene expressionNormal mouse embryonic developmentNuclear receptorsMouse embryonic developmentPreimplantation embryonic developmentSpermatogenic cellsPostmeiotic spermatogenic cellsCytoplasm of oocytesOrphan nuclear receptorNuclear factorPreimplantation Embryos1Early embryosGene transcriptionMaternal proteinsOrphan memberMouse embryosGene expressionPreimplantation embryosGCNFProteinEmbryos