2022
State of the Art for Microhaplotypes
Kidd KK, Pakstis AJ. State of the Art for Microhaplotypes. Genes 2022, 13: 1322. PMID: 35893059, PMCID: PMC9329722, DOI: 10.3390/genes13081322.Peer-Reviewed Original ResearchDNAGene FrequencyHaplotypesHigh-Throughput Nucleotide SequencingHumansPolymorphism, Single NucleotideA multipurpose panel of microhaplotypes for use with STR markers in casework
Kidd KK, Pakstis AJ, Gandotra N, Scharfe C, Podini D. A multipurpose panel of microhaplotypes for use with STR markers in casework. Forensic Science International Genetics 2022, 60: 102729. PMID: 35696960, PMCID: PMC11071123, DOI: 10.1016/j.fsigen.2022.102729.Peer-Reviewed Original ResearchAllelesDNA FingerprintingHigh-Throughput Nucleotide SequencingHumansMicrosatellite RepeatsPolymorphism, Single NucleotideSequence Analysis, DNA
2020
Population genetic data of 74 microhaplotypes in four major U.S. population groups
Oldoni F, Yoon L, Wootton SC, Lagacé R, Kidd KK, Podini D. Population genetic data of 74 microhaplotypes in four major U.S. population groups. Forensic Science International Genetics 2020, 49: 102398. PMID: 33045522, DOI: 10.1016/j.fsigen.2020.102398.Peer-Reviewed Original ResearchMeSH KeywordsDNA FingerprintingGene FrequencyGenetics, PopulationHaplotypesHigh-Throughput Nucleotide SequencingHumansPolymorphism, Single NucleotidePrincipal Component AnalysisRacial GroupsSequence Analysis, DNAUnited StatesA sequence-based 74plex microhaplotype assay for analysis of forensic DNA mixtures
Oldoni F, Bader D, Fantinato C, Wootton SC, Lagacé R, Kidd KK, Podini D. A sequence-based 74plex microhaplotype assay for analysis of forensic DNA mixtures. Forensic Science International Genetics 2020, 49: 102367. PMID: 32919300, DOI: 10.1016/j.fsigen.2020.102367.Peer-Reviewed Original ResearchDNADNA FingerprintingHaplotypesHigh-Throughput Nucleotide SequencingHumansMicrosatellite RepeatsPolymerase Chain ReactionPolymorphism, Single NucleotideSequence Analysis, DNAValidation of novel forensic DNA markers using multiplex microhaplotype sequencing
Gandotra N, Speed WC, Qin W, Tang Y, Pakstis AJ, Kidd KK, Scharfe C. Validation of novel forensic DNA markers using multiplex microhaplotype sequencing. Forensic Science International Genetics 2020, 47: 102275. PMID: 32305739, PMCID: PMC10131188, DOI: 10.1016/j.fsigen.2020.102275.Peer-Reviewed Original ResearchMeSH KeywordsEthnicityForensic GeneticsGenetic MarkersGenetics, PopulationHaplotypesHigh-Throughput Nucleotide SequencingHumansSoftwareConceptsSingle nucleotide polymorphismsMH lociMultiplex sequencingNovel single nucleotide polymorphismsSmall DNA amountsSingle MiSeq runMultiple single nucleotide polymorphismsHigher effective numberBiogeographic variationDNA markersGenomic sequencesNovel lociGenome ProjectDNA amountMiSeq runDifferent world populationsNucleotide polymorphismsLociSequencingMicrohaplotypesEffective numberDiverse range
2019
Population relationships based on 170 ancestry SNPs from the combined Kidd and Seldin panels
Pakstis AJ, Speed WC, Soundararajan U, Rajeevan H, Kidd JR, Li H, Kidd KK. Population relationships based on 170 ancestry SNPs from the combined Kidd and Seldin panels. Scientific Reports 2019, 9: 18874. PMID: 31827153, PMCID: PMC6906462, DOI: 10.1038/s41598-019-55175-x.Peer-Reviewed Original ResearchMeSH KeywordsDatabases, GeneticGene FrequencyGenetic VariationGenetics, PopulationGenotypeHigh-Throughput Nucleotide SequencingHumansPolymorphism, Single NucleotideConceptsGenetic diversityPopulation relationshipsHuman populationAncestry informative SNP panelsInformative SNP panelsMajor continental regionsHuman reference populationsSNP panelIndividual populationsGenotype dataReference populationNative American populationsDiverse collectionAISNPsAllele frequency databasesWorldwide populationDiversityFrequency databaseAmerican populationReference population dataPopulationSNPsPrincipal component analysisCombined panelCluster patternsMAPlex - A massively parallel sequencing ancestry analysis multiplex for Asia-Pacific populations
Phillips C, McNevin D, Kidd K, Lagacé R, Wootton S, de la Puente M, Freire-Aradas A, Mosquera-Miguel A, Eduardoff M, Gross T, Dagostino L, Power D, Olson S, Hashiyada M, Oz C, Parson W, Schneider P, Lareu M, Daniel R. MAPlex - A massively parallel sequencing ancestry analysis multiplex for Asia-Pacific populations. Forensic Science International Genetics 2019, 42: 213-226. PMID: 31377479, DOI: 10.1016/j.fsigen.2019.06.022.Peer-Reviewed Original ResearchMixture deconvolution by massively parallel sequencing of microhaplotypes
Bennett L, Oldoni F, Long K, Cisana S, Madella K, Wootton S, Chang J, Hasegawa R, Lagacé R, Kidd KK, Podini D. Mixture deconvolution by massively parallel sequencing of microhaplotypes. International Journal Of Legal Medicine 2019, 133: 719-729. PMID: 30758713, DOI: 10.1007/s00414-019-02010-7.Peer-Reviewed Original Research
2018
Microhaplotypes in forensic genetics
Oldoni F, Kidd KK, Podini D. Microhaplotypes in forensic genetics. Forensic Science International Genetics 2018, 38: 54-69. PMID: 30347322, DOI: 10.1016/j.fsigen.2018.09.009.Peer-Reviewed Original ResearchMeSH KeywordsDatabases, Nucleic AcidDNA FingerprintingForensic GeneticsGene FrequencyGenetics, PopulationHaplotypesHigh-Throughput Nucleotide SequencingHumansPolymorphism, Single NucleotideRacial GroupsSequence Analysis, DNA
2017
Increasing the reference populations for the 55 AISNP panel: the need and benefits
Pakstis AJ, Kang L, Liu L, Zhang Z, Jin T, Grigorenko EL, Wendt FR, Budowle B, Hadi S, Al Qahtani MS, Morling N, Mogensen HS, Themudo GE, Soundararajan U, Rajeevan H, Kidd JR, Kidd KK. Increasing the reference populations for the 55 AISNP panel: the need and benefits. International Journal Of Legal Medicine 2017, 131: 913-917. PMID: 28070634, PMCID: PMC5491587, DOI: 10.1007/s00414-016-1524-z.Peer-Reviewed Original ResearchMeSH KeywordsDatabases, GeneticEthnicityGene FrequencyGenetics, PopulationGenotypeHigh-Throughput Nucleotide SequencingHumansPolymorphism, Single NucleotideRacial Groups