2000
Short Tandem-Repeat Polymorphism/Alu Haplotype Variation at the PLAT Locus: Implications for Modern Human Origins
Tishkoff S, Pakstis A, Stoneking M, Kidd J, Destro-Bisol G, Sanjantila A, Lu R, Deinard A, Sirugo G, Jenkins T, Kidd K, Clark A. Short Tandem-Repeat Polymorphism/Alu Haplotype Variation at the PLAT Locus: Implications for Modern Human Origins. American Journal Of Human Genetics 2000, 67: 901-925. PMID: 10986042, PMCID: PMC1287905, DOI: 10.1086/303068.Peer-Reviewed Original ResearchMeSH KeywordsAfrica South of the SaharaAllelesAlu ElementsAnimalsChromosomes, Human, Pair 8Dinucleotide RepeatsEvolution, MolecularGene FrequencyGenetic VariationHaplotypesHominidaeHumansLinkage DisequilibriumMicronesiaPapua New GuineaPhylogenyPolymorphism, GeneticSequence DeletionTandem Repeat SequencesConceptsNon-African populationsHaplotype variationGene flowLinkage disequilibriumShort tandem repeat polymorphismsHaplotype diversityPLAT locusLarge effective population sizesAncient gene flowEffective population sizeDinucleotide short tandem repeat polymorphismsRecent common ancestryAlu insertion/deletion polymorphismHuman evolutionary historyDiverse human populationsModern human originsEvolutionary historyCommon ancestryAfrican populationsPopulation substructureAlu elementsPolymorphic Alu elementsPopulation sizeRare haplotypesDinucleotide repeatsA primate genome project deserves high priority.
McConkey E, Varki A, Allman J, Benirschke K, Crick F, Deacon T, de Waal F, Dugaiczyk A, Gagneux P, Goodman M, Grossman L, Gumucio D, Insel T, Kidd K, King M, Krauter K, Kucherlapati R, Motulsky A, Nelson D, Oefner P, Palade G, Palade G, Ryder O, Stewart C, Sikela J, Stone A, Woodruff D. A primate genome project deserves high priority. Science 2000, 289: 1295-6. PMID: 10979852, DOI: 10.1126/science.289.5483.1295b.Peer-Reviewed Original Research
1999
Evolution of the HOXB6 intergenic region: Motif conservation at the lateral plate mesoderm (LPM) enhancer element
Deinard A, Dorit R, Castiglione C, Jiang Z, Becker D, Ruddle F, Schugart K, Kidd K. Evolution of the HOXB6 intergenic region: Motif conservation at the lateral plate mesoderm (LPM) enhancer element. Journal Of Experimental Zoology 1999, 285: 170-176. PMID: 10440728, DOI: 10.1002/(sici)1097-010x(19990815)285:2<170::aid-jez9>3.0.co;2-j.Peer-Reviewed Original ResearchEvolution of a HOXB6 intergenic region within the great apes and humans
Deinard A, Kidd K. Evolution of a HOXB6 intergenic region within the great apes and humans. Journal Of Human Evolution 1999, 36: 687-703. PMID: 10330333, DOI: 10.1006/jhev.1999.0298.Peer-Reviewed Original ResearchConceptsCommon ancestorGenetic variationGenetic dataIntraspecific genetic variationHomo-Pan cladeGreat apesNuclear lociGreat ape speciesMolecular evolutionIntraspecific dataPhylogenetic reconstructionIntergenic regionIntraspecific variationDNA sequencesNucleotide substitutionsGenetic polymorphismsHomo-PanPygmy chimpanzeesApe speciesCommon chimpanzeesCladeHomo sapiens sapiensAncestorGorillasLoci
1998
Hominoid phylogeny: inferences from a sub-terminal minisatellite analyzed by repeat expansion detection (RED)
Deinard A, Sirugo G, Kidd K. Hominoid phylogeny: inferences from a sub-terminal minisatellite analyzed by repeat expansion detection (RED). Journal Of Human Evolution 1998, 35: 313-7. PMID: 9749409.Peer-Reviewed Original ResearchGenetic Structure of the Ancestral Population of Modern Humans
Ziętkiewicz E, Yotova V, Jarnik M, Korab-Laskowska M, Kidd K, Modiano D, Scozzari R, Stoneking M, Tishkoff S, Batzer M, Labuda D. Genetic Structure of the Ancestral Population of Modern Humans. Journal Of Molecular Evolution 1998, 47: 146-155. PMID: 9694663, DOI: 10.1007/pl00006371.Peer-Reviewed Original ResearchConceptsNucleotide diversityAncestral populationsNeutral DNA polymorphismsOverall nucleotide diversityPopulation-specific variantsOld polymorphismsGenetic structureAncestral stateHuman divergenceOrthologous sitesGenetic variabilityDNA polymorphismsNew allelesHuman variantsPolymorphic sitesNon-AfricansWorldwide sampleGreat apesEffective sizeModern humansHuman groupsDiversityPolymorphismDivergenceNew GuineaEvolution of a D2 Dopamine Receptor Intron Within the Great Apes and Humans
Deinard A, Kidd K. Evolution of a D2 Dopamine Receptor Intron Within the Great Apes and Humans. Mitochondrial DNA Part A 1998, 8: 289-301. PMID: 10993600, DOI: 10.3109/10425179809034074.Peer-Reviewed Original ResearchConceptsDenaturing Gradient Gel ElectrophoresisGenetic variationComparative phylogenetic analysisDNA sequence variationSequence comparative analysisCross-species comparisonsGreat apesEvolutionary relationshipsGradient gel electrophoresisPhylogenetic analysisGeographical rangeSequence variationPygmy chimpanzeesCommon chimpanzeesDNA sequencingDirect DNA sequencingIntronsGel electrophoresisSpeciesChimpanzeesApesSequencingComparative analysisHumansVariation
1996
Interpretations of multiregional evolution.
Wolpoff; M, Tishkoff S, Kidd K, Risch N. Interpretations of multiregional evolution. Science 1996, 274: 704-7. PMID: 8966550, DOI: 10.1126/science.274.5288.704d.Peer-Reviewed Original ResearchMinisatellite diversity supports a recent African origin for modern humans
Armour J, Anttinen T, May C, Vega E, Sajantila A, Kidd J, Kidd K, Bertranpetit J, Pääbo S, Jeffreys A. Minisatellite diversity supports a recent African origin for modern humans. Nature Genetics 1996, 13: 154-160. PMID: 8640220, DOI: 10.1038/ng0696-154.Peer-Reviewed Original ResearchConceptsRecent African originNon-African populationsModern human diversityAllelic diversityMinisatellite diversityVariable lociAncestral relationshipsHuman chromosomesAllelic structureAfrican originGreat diversityDiversityHuman diversityAfrican chromosomesChromosomesAllele familiesLociModern humansDifferent populationsGlobal Patterns of Linkage Disequilibrium at the CD4 Locus and Modern Human Origins
Tishkoff S, Dietzsch E, Speed W, Pakstis A, Kidd J, Cheung K, Bonné-Tamir B, Santachiara-Benerecetti A, Moral P, Krings M, Pääbo S, Watson E, Risch N, Jenkins T, Kidd K. Global Patterns of Linkage Disequilibrium at the CD4 Locus and Modern Human Origins. Science 1996, 271: 1380-1387. PMID: 8596909, DOI: 10.1126/science.271.5254.1380.Peer-Reviewed Original Research
1995
The CEPH consortium linkage map of human chromosome 16
Kozman H, Keith T, Donis-keller H, White R, Weissenbach J, Dean M, Vergnaud G, Kidd K, Gusella J, Royle N, Sutherland G, Mulley J. The CEPH consortium linkage map of human chromosome 16. Genomics 1995, 25: 44-58. PMID: 7774955, DOI: 10.1016/0888-7543(95)80108-x.Peer-Reviewed Original ResearchConceptsHuman chromosome 16Genetic mapLinkage mapMap lengthSomatic cell hybrid panelFemale map lengthsChromosome 16Male map lengthFramework genetic mapCell hybrid panelMean genetic distanceSex-averaged mapRestriction enzyme combinationsGenetic distanceAverage heterozygosityEntire chromosomesHybrid panelPhysical mapCEPH consortium linkage mapFamily DNACEPH family DNAsPrimer pairsMarker genotypesLociEnzyme combinations
1992
DNA sequence polymorphism within hominoid species exceeds the number of phylogenetically informative characters for a HOX2 locus.
Ruano G, Rogers J, Ferguson-Smith A, Kidd K. DNA sequence polymorphism within hominoid species exceeds the number of phylogenetically informative characters for a HOX2 locus. Molecular Biology And Evolution 1992, 9: 575-586. PMID: 1352841, DOI: 10.1093/oxfordjournals.molbev.a040743.Peer-Reviewed Original ResearchConceptsSeparate speciation eventsDNA sequence polymorphismsMaximum parsimony methodsBase pair differencesDenaturing gradient gelGene treesSpeciation eventsSpecies clustersBase pair substitutionsPhylogenetic treeInformative charactersComplete sequenceSequence polymorphismsHominoid speciesSpecies variabilityDifferent allelesG. gorillaSpeciesP. troglodytesAllelesGradient gelsGorillasSequenceTreesGenus
1991
Drift, admixture, and selection in human evolution: a study with DNA polymorphisms.
Bowcock A, Kidd J, Mountain J, Hebert J, Carotenuto L, Kidd K, Cavalli-Sforza L. Drift, admixture, and selection in human evolution: a study with DNA polymorphisms. Proceedings Of The National Academy Of Sciences Of The United States Of America 1991, 88: 839-843. PMID: 1992475, PMCID: PMC50909, DOI: 10.1073/pnas.88.3.839.Peer-Reviewed Original ResearchConceptsDNA polymorphismsEqual evolutionary ratesRandom genetic driftEvolutionary ratesGenetic driftEvolutionary analysisNatural selectionGenetic markersHuman evolutionGene frequenciesEarly admixtureHuman differentiationEvolutionary modelsPolymorphismHigh variationLow variationGenetic polymorphismsMeasures of variationGenesPopulationSpeciesObserved distributionDifferentiationVariationSelection