2010
Aberrant overexpression and function of the miR-17-92 cluster in MLL-rearranged acute leukemia
Mi S, Li Z, Chen P, He C, Cao D, Elkahloun A, Lu J, Pelloso LA, Wunderlich M, Huang H, Luo RT, Sun M, He M, Neilly MB, Zeleznik-Le NJ, Thirman MJ, Mulloy JC, Liu PP, Rowley JD, Chen J. Aberrant overexpression and function of the miR-17-92 cluster in MLL-rearranged acute leukemia. Proceedings Of The National Academy Of Sciences Of The United States Of America 2010, 107: 3710-3715. PMID: 20133587, PMCID: PMC2840429, DOI: 10.1073/pnas.0914900107.Peer-Reviewed Original ResearchConceptsMouse bone marrow progenitor cellsMiRNA clusterTarget genesMLL fusionsBone marrow progenitor cellsMiR-17Marrow progenitor cellsCell differentiationDNA copy number amplificationsWild-type MLLProgenitor cellsRelevant target genesHistone H3 acetylationPotential target genesMLL fusion genesCopy number amplificationDevelopment of MLLH3K4 trimethylationIndividual miRNAsH3 acetylationMixed lineage leukemiaCell cycleHuman cellsDirect bindingMiRNAs
2009
microRNA Expression during Trophectoderm Specification
Viswanathan SR, Mermel CH, Lu J, Lu CW, Golub TR, Daley GQ. microRNA Expression during Trophectoderm Specification. PLOS ONE 2009, 4: e6143. PMID: 19582159, PMCID: PMC2702083, DOI: 10.1371/journal.pone.0006143.Peer-Reviewed Original ResearchConceptsEmbryonic stem cellsTrophectoderm specificationPreimplantation developmentMurine embryosFirst cell fate decisionCell fate decisionsTight developmental regulationStem cellsInner cell massCandidate miRNAsNumber of miRNAsStages of embryogenesisRole of microRNAsMiRNA expression changesMammalian developmentTranscription factorsDevelopmental regulationEctopic expressionTarget genesExpression changesTrophectodermal cellsTrophectodermMiRNA expressionFunctional roleMiRNAs
2007
MicroRNA Expression Profiles in Acute Myeloid Leukemia with Common Translocations.
Li Z, Lu J, Sun M, Mi S, Zhang H, Luo R, Qian Z, Neilly M, Wang Y, Jin J, Zhang Y, Bohlander S, Larson R, LeBeau M, Thirman M, Golub T, Rowley J, Chen J. MicroRNA Expression Profiles in Acute Myeloid Leukemia with Common Translocations. Blood 2007, 110: 3181. DOI: 10.1182/blood.v110.11.3181.3181.Peer-Reviewed Original ResearchAcute myeloid leukemiaTarget genesExpression profilesDNA copy number amplificationsProtein-coding genesExpression profiling methodsImportant target genesMyeloid leukemiaNon-coding RNAsCritical target genesNormal controlsTreatment of AMLCBF acute myeloid leukemiaCopy number amplificationMiRNA expression profilesDevelopment of AMLCommon translocationEpigenetic regulationMicroRNA expression profileWide analysisComplex genetic alterationsExpression profilingDNA microarraysBiological roleTumor suppressorMicroRNA Expression Signatures Accurately Discriminate Acute Lymphoblastic Leukemia from Acute Myeloid Leukemia.
Mi S, Lu J, Sun M, Li Z, Zhang H, Neilly M, Wang Y, Qian Z, Jin J, Zhang Y, Bohlander S, Le M, Larson R, Golub T, Rowley J, Chen J. MicroRNA Expression Signatures Accurately Discriminate Acute Lymphoblastic Leukemia from Acute Myeloid Leukemia. Blood 2007, 110: 231. DOI: 10.1182/blood.v110.11.231.231.Peer-Reviewed Original ResearchAcute myeloid leukemiaAcute lymphoblastic leukemiaAcute leukemiaLymphoblastic leukemiaMyeloid leukemiaMiR-128aOverall survival rateExpression signaturesCommon cytogenetic subtypeMicroRNA expression signatureAcute leukemia samplesDevelopment of cancerFlow cytometric methodHuman acute leukemiaQuantitative real-time PCRReal-time PCRT cellsCytogenetic subtypesNormal controlsSurvival rateMiR-223Vivo modelLeukemiaNovel markerTarget genes
2005
Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals
Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M. Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals. Nature 2005, 434: 338-345. PMID: 15735639, PMCID: PMC2923337, DOI: 10.1038/nature03441.Peer-Reviewed Original ResearchConceptsMiRNA genesRegulatory motifsNew miRNA genesHuman miRNA genesPost-transcriptional regulationCommon regulatory motifsLikely target genesMammalian genomesDog genomeGene regulationPromoter analysisHuman genomeHuman genesHuman promotersTarget genesUntranslated regionSystematic discoveryGenomeComprehensive identificationGenesNew motifMotifCandidate motifsFunctional elementsPromoter