2023
Unveiling the Impact of the Omicron Variant: Insights from Genomic Surveillance in Mato Grosso do Sul, Midwest Brazil
de Mello Almeida Maziero L, Giovanetti M, Fonseca V, Zardin M, de Castro Lichs G, de Rezende Romera G, Tsuha D, Frias D, Escandolhero V, Demarchi L, Castilho L, Barbosa K, Tebet D, Xavier J, Fritsch H, Lima M, de Oliveira C, Santos E, Kashima S, do Carmo Said R, Rosewell A, Croda J, Alcantara L, Gonçalves C. Unveiling the Impact of the Omicron Variant: Insights from Genomic Surveillance in Mato Grosso do Sul, Midwest Brazil. Viruses 2023, 15: 1604. PMID: 37515290, PMCID: PMC10386548, DOI: 10.3390/v15071604.Peer-Reviewed Original ResearchConceptsGenomic surveillanceWhole-genome sequencingMultiple introduction eventsGenome sequencePublic health interventionsGenomic dataGenomic monitoringIntroduction eventsPublic health responseGenomic landscapeDispersal dynamicsPhylodynamic analysesPublic health laboratoriesHealth interventionsMato GrossoHealth responseTransmissible variantsSignificant burdenCentral Public Health LaboratoryOmicron variantVariantsHealth laboratoriesSequenceMidwest region of BrazilViral strains
2021
Evolutionary Dynamics and Dissemination Pattern of the SARS-CoV-2 Lineage B.1.1.33 During the Early Pandemic Phase in Brazil
Resende P, Delatorre E, Gräf T, Mir D, Motta F, Appolinario L, da Paixão A, da Fonseca Mendonça A, Ogrzewalska M, Caetano B, Wallau G, Docena C, dos Santos M, de Almeida Ferreira J, Sousa E, da Silva S, Fernandes S, Vianna L, da Costa Souza L, Ferro J, Nardy V, Santos C, Riediger I, do Carmo Debur M, Croda J, Oliveira W, Abreu A, Bello G, Siqueira M. Evolutionary Dynamics and Dissemination Pattern of the SARS-CoV-2 Lineage B.1.1.33 During the Early Pandemic Phase in Brazil. Frontiers In Microbiology 2021, 11: 615280. PMID: 33679622, PMCID: PMC7925893, DOI: 10.3389/fmicb.2020.615280.Peer-Reviewed Original ResearchPublic health interventionsHealth interventionsEarly pandemic phaseContinuous genomic surveillanceSARS-CoV-2 lineagesEffective reproductive numberLow prevalenceModerate prevalenceViral transmissionSARS-CoV-2 genomePandemic phaseWhole viral genomeGenomic surveillanceDissemination patternsAir travel restrictionsPrevalenceReproductive numberInterventionRio de JaneiroViral genomeBrazilian strainsPhylodynamic analysisPrevious studiesEpidemic dynamics
2020
Genomic variant-identification methods may alter Mycobacterium tuberculosis transmission inferences
Walter KS, Colijn C, Cohen T, Mathema B, Liu Q, Bowers J, Engelthaler DM, Narechania A, Lemmer D, Croda J, Andrews JR. Genomic variant-identification methods may alter Mycobacterium tuberculosis transmission inferences. Microbial Genomics 2020, 6: mgen000418. PMID: 32735210, PMCID: PMC7641424, DOI: 10.1099/mgen.0.000418.Peer-Reviewed Original Research
2019
Paediatric tuberculosis transmission outside the household: challenging historical paradigms to inform future public health strategies
Martinez L, Lo N, Cords O, Hill P, Khan P, Hatherill M, Mandalakas A, Kay A, Croda J, Horsburgh C, Zar H, Andrews J. Paediatric tuberculosis transmission outside the household: challenging historical paradigms to inform future public health strategies. The Lancet Respiratory Medicine 2019, 7: 544-552. PMID: 31078497, PMCID: PMC7323920, DOI: 10.1016/s2213-2600(19)30137-7.Peer-Reviewed Original ResearchConceptsM tuberculosis transmissionHousehold contact tracingTuberculosis transmissionFuture public health strategiesContact tracingGlobal tuberculosis control effortsAdult tuberculosis casesPaediatric tuberculosis infectionMycobacterium tuberculosis transmissionHigh-burden settingsTuberculosis control effortsEffective public health responsePopulation attributable fractionPublic health strategiesAge 5 yearsCommunity-based interventionsPublic health interventionsPublic health responsePediatric transmissionChildhood tuberculosisTuberculosis infectionTuberculosis casesActive surveillanceHealth strategiesHousehold exposure
2018
Suicide in Brazilian indigenous communities: clustering of cases in children and adolescents by household
Lazzarini TA, Gonçalves CCM, Benites WM, da Silva L, Tsuha DH, Ko AI, Rohrbaugh R, Andrews JR, Croda J. Suicide in Brazilian indigenous communities: clustering of cases in children and adolescents by household. Revista De Saúde Pública 2018, 52: 56. PMID: 29791676, PMCID: PMC5958965, DOI: 10.11606/s1518-8787.2018052000541.Peer-Reviewed Original ResearchConceptsHealth interventionsSuicide ratesHousehold clustersRetrospective cohort studyBroader public health interventionsConclusions High ratesPublic health interventionsMental health interventionsHigh rateCohort studyHigh suicide ratesLower socioeconomic indicatorsAdult suicideAdolescent malesOverall suicide ratesChildrenSuicideGreater proportionChild suicideInterventionSocioeconomic indicatorsAdolescentsIndigenous individualsSuicide clustering