2024
A taxonomy for advancing systematic error analysis in multi-site electronic health record-based clinical concept extraction
Fu S, Wang L, He H, Wen A, Zong N, Kumari A, Liu F, Zhou S, Zhang R, Li C, Wang Y, St Sauver J, Liu H, Sohn S. A taxonomy for advancing systematic error analysis in multi-site electronic health record-based clinical concept extraction. Journal Of The American Medical Informatics Association 2024, 31: 1493-1502. PMID: 38742455, PMCID: PMC11187420, DOI: 10.1093/jamia/ocae101.Peer-Reviewed Original ResearchNatural language processingClinical concept extractionElectronic health recordsConcept extractionClinical natural language processingConcept extraction taskNatural language processing modelsElectronic health record settingsDomain-specific knowledgeError taxonomyHeterogeneity of electronic health recordsReal-world dataAnalysis processExtraction taskOWL formatAnnotated examplesError analysisNLP modelsCommunity feedbackLanguage processingMulti-site settingConduct error analysisError classesError typesError analysis process
2020
Clinical concept extraction: A methodology review
Fu S, Chen D, He H, Liu S, Moon S, Peterson K, Shen F, Wang L, Wang Y, Wen A, Zhao Y, Sohn S, Liu H. Clinical concept extraction: A methodology review. Journal Of Biomedical Informatics 2020, 109: 103526. PMID: 32768446, PMCID: PMC7746475, DOI: 10.1016/j.jbi.2020.103526.Peer-Reviewed Original ResearchConceptsNatural language processingConcept extractionClinical concept extractionACM Digital LibraryExtraction applicationsClinical decision supportDigital librariesExtracting conceptsLanguage processingDecision supportDevelopment processApplicationsMethodology reviewExtractionWebEnglishTextPublicationsProcessingAvailable methodsInformationLibraryQuality improvementSearchTool