2021
OncoSplicing: an updated database for clinically relevant alternative splicing in 33 human cancers
Zhang Y, Yao X, Zhou H, Wu X, Tian J, Zeng J, Yan L, Duan C, Liu H, Li H, Chen K, Hu Z, Ye Z, Xu H. OncoSplicing: an updated database for clinically relevant alternative splicing in 33 human cancers. Nucleic Acids Research 2021, 50: d1340-d1347. PMID: 34554251, PMCID: PMC8728274, DOI: 10.1093/nar/gkab851.Peer-Reviewed Original ResearchMeSH KeywordsAlternative SplicingDatabases, GeneticGene Expression Regulation, NeoplasticGene Regulatory NetworksHumansNeoplasmsRNA SplicingSoftwareConceptsAlternative splicingCancer-specific splicing eventsDifferential alternative splicingHuman cancersTCGA tumor samplesSplicing differencesSplicing eventsProtein complexityAdjacent normal samplesSplicingGene expressionSplicing dataNormal samplesAbnormal splicingIntegrative viewMRNA levelsDifferential analysisTumor samplesTranscripts
2017
Investigating MicroRNA and transcription factor co-regulatory networks in colorectal cancer
Wang H, Luo J, Liu C, Niu H, Wang J, Liu Q, Zhao Z, Xu H, Ding Y, Sun J, Zhang Q. Investigating MicroRNA and transcription factor co-regulatory networks in colorectal cancer. BMC Bioinformatics 2017, 18: 388. PMID: 28865443, PMCID: PMC5581471, DOI: 10.1186/s12859-017-1796-4.Peer-Reviewed Original ResearchColorectal NeoplasmsGene Expression Regulation, NeoplasticGene Regulatory NetworksHumansMicroRNAsTranscription FactorsTranscription, Genetic