2023
FinFax: Fast Interpretation of Fax with NLP
Anjum O, Chen L, Denlinger R, Anam E, Dongsheng Y, Wooldridge C, Citardi M, Zhang J, Xu H, Jiang X. FinFax: Fast Interpretation of Fax with NLP. 2023, 1-2. DOI: 10.1145/3584371.3613019.Peer-Reviewed Original ResearchEnd systemCritical medical informationElectronic health record systemsHealth record systemsReal-life applicationsVital clinical dataFirst endManual processingInformation exchangeHealthcare organizationsOverall workflowHealth recordsMedical informationRecord systemWorkflowFinal outputFast interpretationFaxAcademic environmentInformationPertinent informationMultiple solutionsProcessingReal-life hospital settingsNLPRepresenting and utilizing clinical textual data for real world studies: An OHDSI approach
Keloth V, Banda J, Gurley M, Heider P, Kennedy G, Liu H, Liu F, Miller T, Natarajan K, V Patterson O, Peng Y, Raja K, Reeves R, Rouhizadeh M, Shi J, Wang X, Wang Y, Wei W, Williams A, Zhang R, Belenkaya R, Reich C, Blacketer C, Ryan P, Hripcsak G, Elhadad N, Xu H. Representing and utilizing clinical textual data for real world studies: An OHDSI approach. Journal Of Biomedical Informatics 2023, 142: 104343. PMID: 36935011, PMCID: PMC10428170, DOI: 10.1016/j.jbi.2023.104343.Peer-Reviewed Original ResearchConceptsNatural language processingCommon data modelTextual dataNLP solutionObservational Health Data SciencesOMOP Common Data ModelSpecific use casesObservational Medical Outcomes Partnership Common Data ModelHealth Data SciencesRepresentation of informationUse casesElectronic health recordsReal-world evidence generationData scienceClinical textData modelClinical notesLanguage processingHealth recordsLoad dataClinical documentationCurrent applicationsInformationWorkflowEvidence generation
2012
DTome: a web-based tool for drug-target interactome construction
Sun J, Wu Y, Xu H, Zhao Z. DTome: a web-based tool for drug-target interactome construction. BMC Bioinformatics 2012, 13: s7. PMID: 22901092, PMCID: PMC3372450, DOI: 10.1186/1471-2105-13-s9-s7.Peer-Reviewed Original ResearchConceptsWeb-based toolUser-friendly web interfaceWeb-based queriesRich data sourceDifferent knowledge basesDatabase schemaWeb interfaceVisualization processKnowledge basesComputational workflowDiscovery processData sourcesNetworkDrug-target interactionsDrugs' primary targetsDrug-target networkWorkflowEarly-stage drug discoveryNetwork analysisQueriesToolPromising approachDrug discovery processSchemaDetailed network analysis
2011
Data from clinical notes: a perspective on the tension between structure and flexible documentation
Rosenbloom S, Denny J, Xu H, Lorenzi N, Stead W, Johnson K. Data from clinical notes: a perspective on the tension between structure and flexible documentation. Journal Of The American Medical Informatics Association 2011, 18: 181-186. PMID: 21233086, PMCID: PMC3116264, DOI: 10.1136/jamia.2010.007237.Peer-Reviewed Original ResearchConceptsReusable dataElectronic health record system adoptionStructured documentationComputer-based documentation systemsClinical notesClinical documentationStructured dataText processingSystem adoptionRecord systemSuch systemsDocumentation systemWorkflowContent needsProvidersUsabilityDocumentationExpressivitySystemHealthcare providersPatient careDataProcessingMajor goalAdoption