2024
Relation extraction using large language models: a case study on acupuncture point locations
Li Y, Peng X, Li J, Zuo X, Peng S, Pei D, Tao C, Xu H, Hong N. Relation extraction using large language models: a case study on acupuncture point locations. Journal Of The American Medical Informatics Association 2024, 31: 2622-2631. PMID: 39208311, PMCID: PMC11491641, DOI: 10.1093/jamia/ocae233.Peer-Reviewed Original ResearchAcupuncture point locationsAcupoint locationLocation of acupointsClinical decision supportAcupuncture knowledgeAcupuncture trainingAcupuncture therapyAcupunctureAcupointsComplementary medicineEducational moduleWestern Pacific RegionInformatics applicationsDecision supportScoresGenerative Pre-trained TransformerWHO standardsF1 scoreLanguage modelPacific regionWHODomain-specific fine-tuningTrainingStudyMicro-averaged F1 scoreLeveraging error-prone algorithm-derived phenotypes: Enhancing association studies for risk factors in EHR data
Lu Y, Tong J, Chubak J, Lumley T, Hubbard R, Xu H, Chen Y. Leveraging error-prone algorithm-derived phenotypes: Enhancing association studies for risk factors in EHR data. Journal Of Biomedical Informatics 2024, 157: 104690. PMID: 39004110, DOI: 10.1016/j.jbi.2024.104690.Peer-Reviewed Original ResearchElectronic health recordsElectronic health record dataKaiser Permanente WashingtonEHR-derived phenotypesAssociation studiesHealth recordsColon cancer recurrencePhenotyping errorsComputable phenotypeRisk factorsCancer recurrenceMultiple phenotypesReduce biasImprove estimation accuracySimulation studyBias reductionKaiserReduction of biasBiasEstimation accuracyAssociationStudyOutcomesRiskEstimation efficiency
2018
Psychiatric stressor recognition from clinical notes to reveal association with suicide
Zhang Y, Zhang O, Li R, Flores A, Selek S, Zhang X, Xu H. Psychiatric stressor recognition from clinical notes to reveal association with suicide. Health Informatics Journal 2018, 25: 1846-1862. PMID: 30328378, DOI: 10.1177/1460458218796598.Peer-Reviewed Original ResearchConceptsElectronic health recordsSuicidal behaviorHealth recordsSuicide ideation/attemptsTremendous economic burdenPsychiatric stressorsSuicide risk factorsRisk factorsEconomic burdenPsychiatric stressClinical notesLarge-scale studiesPsychiatric notesSuicideAssociationSignificant stressorsStressorsPrior studiesPercentPrevious studiesStudy