2024
Mapping Clinical Documents to the Logical Observation Identifiers, Names and Codes (LOINC) Document Ontology using Electronic Health Record Systems Structured Metadata.
Khan H, Mosa A, Paka V, Rana M, Mandhadi V, Islam S, Xu H, McClay J, Sarker S, Rao P, Waitman L. Mapping Clinical Documents to the Logical Observation Identifiers, Names and Codes (LOINC) Document Ontology using Electronic Health Record Systems Structured Metadata. AMIA Annual Symposium Proceedings 2024, 2023: 1017-1026. PMID: 38222329, PMCID: PMC10785913.Peer-Reviewed Original ResearchConceptsDocument ontologyElectronic health recordsBag-of-words approachNatural language processing techniquesFree-text documentsLanguage processing techniquesClinical documentationLogical Observation IdentifiersText documentsStructured metadataWords approachComputational scalabilityMetadataHealth recordsEHR documentationElectronic health record fieldsProcessing techniquesOntologyDocumentsAutomated pipelineNLPScalabilityClinical careFrameworkLOINC
2014
Open Source Clinical NLP - More than Any Single System.
Masanz J, Pakhomov S, Xu H, Wu S, Chute C, Liu H. Open Source Clinical NLP - More than Any Single System. AMIA Joint Summits On Translational Science Proceedings 2014, 2014: 76-82. PMID: 25954581, PMCID: PMC4419764.Peer-Reviewed Original ResearchClinical NLPNLP systemsNatural language processing toolsOpen source softwareLanguage processing toolsInformation technology practicesPluggable componentsSource softwareNLP softwareProcessing capabilitiesProcessing toolsResearch communityNLPCollaborative communitySingle systemSoftwareTechnology practicesNLP activityUIMAAnnotatorsSystemApacheOngoing activityFrameworkCapability
2011
Modeling drug exposure data in electronic medical records: an application to warfarin.
Liu M, Jiang M, Kawai V, Stein C, Roden D, Denny J, Xu H. Modeling drug exposure data in electronic medical records: an application to warfarin. AMIA Annual Symposium Proceedings 2011, 2011: 815-23. PMID: 22195139, PMCID: PMC3243123.Peer-Reviewed Original ResearchConceptsNatural language processingMachine learning technologiesElectronic medical recordsDrug exposure informationLearning technologyLanguage processingTemporal informationInformatics frameworkClinical narrativesDrug mentionsMedical recordsDrug exposure dataFrameworkReceiver operator characteristic curveDrug exposure historyInformationDrug-related researchWarfarin exposureDrug regimensHospital admissionDrug exposureAccurate modelingDrug informationExposure informationExposure data