2021
A fast likelihood approach for estimation of large phylogenies from continuous trait data
Peng J, Rajeevan H, Kubatko L, RoyChoudhury A. A fast likelihood approach for estimation of large phylogenies from continuous trait data. Molecular Phylogenetics And Evolution 2021, 161: 107142. PMID: 33713799, DOI: 10.1016/j.ympev.2021.107142.Peer-Reviewed Original ResearchConceptsContinuous trait dataMaximum likelihood estimatorMaximum likelihood estimatesMathematical propertiesHundreds of taxaInternal branch lengthsFast approximationAddition of taxaLarge-scale genomic dataCollection of methodsBayesian frameworkLikelihood estimatorLikelihood estimatesLikelihood approachMaximum likelihoodIntensive calculationsModel-based methodApproximationLarge phylogeniesComparable accuracyPossible phylogenyInferenceBranch lengthsEstimatorSuch data
2009
The phenotype and genotype experiment object model (PaGE‐OM): a robust data structure for information related to DNA variation
Brookes AJ, Lehvaslaiho H, Muilu J, Shigemoto Y, Oroguchi T, Tomiki T, Mukaiyama A, Konagaya A, Kojima T, Inoue I, Kuroda M, Mizushima H, Thorisson GA, Dash D, Rajeevan H, Darlison MW, Woon M, Fredman D, Smith AV, Senger M, Naito K, Sugawara H. The phenotype and genotype experiment object model (PaGE‐OM): a robust data structure for information related to DNA variation. Human Mutation 2009, 30: 968-977. PMID: 19479963, DOI: 10.1002/humu.20973.Peer-Reviewed Original Research