2010
Promoters, enhancers, and transcription target RAG1 binding during V(D)J recombination
Ji Y, Little AJ, Banerjee JK, Hao B, Oltz EM, Krangel MS, Schatz DG. Promoters, enhancers, and transcription target RAG1 binding during V(D)J recombination. Journal Of Experimental Medicine 2010, 207: 2809-2816. PMID: 21115692, PMCID: PMC3005232, DOI: 10.1084/jem.20101136.Peer-Reviewed Original ResearchMeSH KeywordsAcetylationAnimalsBinding, CompetitiveChromatin ImmunoprecipitationDNAEnhancer Elements, GeneticFemaleGene RearrangementGenes, ImmunoglobulinGenotypeHistonesHMGB1 ProteinHomeodomain ProteinsMaleMiceMice, Inbred C57BLMice, KnockoutPromoter Regions, GeneticProtein BindingReceptors, Antigen, T-Cell, alpha-betaRecombination, GeneticTranscription, GeneticVDJ Recombinases
2003
Curariform Antagonists Bind in Different Orientations to Acetylcholine-binding Protein*
Gao F, Bern N, Little A, Wang HL, Hansen SB, Talley TT, Taylor P, Sine SM. Curariform Antagonists Bind in Different Orientations to Acetylcholine-binding Protein*. Journal Of Biological Chemistry 2003, 278: 23020-23026. PMID: 12682067, PMCID: PMC3191914, DOI: 10.1074/jbc.m301151200.Peer-Reviewed Original ResearchConceptsAcetylcholine-binding proteinDocking orientationTrp-53Site residuesSubunit interfaceLigand bindingProtein flexibilityAChBPNicotinic acetylcholine receptorsSide chainsTyr-89Binding sitesMutagenesisReceptor binding sitesAcetylcholine receptorsProteinSimilar ligandsDynamic structureBindingStructure-activity relationshipsMolecular dynamics simulationsEquivalent nitrogenComputational methodsStructural levelDistinct orientations