2014
An Efficient Algorithm for Microarray Probes Re-annotation
Foszner P, Gruca A, Polanski A, Marczyk M, Jaksik R, Polanska J. An Efficient Algorithm for Microarray Probes Re-annotation. Lecture Notes In Computer Science 2014, 8342: 201-218. DOI: 10.1007/978-3-642-54455-2_9.Peer-Reviewed Original ResearchRe-annotation procedureComputational problemsEfficient algorithmAvailable servicesHuge sizeDNA microarray dataSuch dataChip standardsDNA microarray experimentsElaborated systemMicroarray dataStandard chipsAlgorithmSystemEffective toolToolTaskAnalysis of resultsMicroarray probesMicroarray experimentsMicroarray probe setsServicesBLATDataDatabase
2013
Adaptive filtering of microarray gene expression data based on Gaussian mixture decomposition
Marczyk M, Jaksik R, Polanski A, Polanska J. Adaptive filtering of microarray gene expression data based on Gaussian mixture decomposition. BMC Bioinformatics 2013, 14: 101. PMID: 23510016, PMCID: PMC3637832, DOI: 10.1186/1471-2105-14-101.Peer-Reviewed Original ResearchConceptsGaussian mixture decompositionFalse discoveriesMicroarray gene expression dataNon-informative genesAdaptive filteringSample meanAdaptive methodSample varianceGaussian componentsMixture decompositionGene filteringEarlier paperGene expression dataFilteringOptimal threshold valuePrevious methodsMicroarray experimentsNew methodTwo-step procedureThreshold valueCorrection methodPower of detectionImportant parametersSecond stepMicroarray data
2011
Efficient Algorithm for Microarray Probes Re-annotation
Foszner P, Gruca A, Polanski A, Marczyk M, Jaksik R, Polanska J. Efficient Algorithm for Microarray Probes Re-annotation. Lecture Notes In Computer Science 2011, 6923: 281-289. DOI: 10.1007/978-3-642-23938-0_29.Peer-Reviewed Original ResearchRe-annotation procedureComputational problemsEfficient algorithmAvailable servicesHuge sizeDNA microarray dataChip standardsDNA microarray experimentsElaborated systemMicroarray dataStandard chipsAlgorithmSystemAnalysis of resultsMicroarray probesMicroarray experimentsMicroarray probe setsServicesBLATDatabaseDataBioinformatics aspectsSet