Publications

2026

Balance Versus Bias: Correcting Misinformation About the 2025 ATS Community-Acquired Pneumonia Guidelines
Ramirez J, Jones B, Oren E, Soni N, Restrepo M, Musher D, Erstad B, Pickens C, Helgeson S, Crothers K, Metlay J, Bissell B, Cao B, Chalmers J, Dela Cruz C, Liang S, Waterer G, Paine M, Hawkins C, Wilson K. Balance Versus Bias: Correcting Misinformation About the 2025 ATS Community-Acquired Pneumonia Guidelines. Clinical Infectious Diseases 2026, ciag153. PMID: 41787921, DOI: 10.1093/cid/ciag153.
Peer-Reviewed Original Research
Concepts
Early-activated extracellular matrix proteins shape the metabolic and spatial dynamics of the kidney fibrotic microenvironment.
Gui Y, Li W, Liu JJ, Wang Y, Jones C, Bansal R, Mallari SM, Shaffer HW, Yu Y, Fu H, Tang TT, Liu S, Liu Y, Zhou D. Early-activated extracellular matrix proteins shape the metabolic and spatial dynamics of the kidney fibrotic microenvironment. Nat Metab 2026 PMID: 41776110, DOI: 10.1038/s42255-026-01458-3.
Peer-Reviewed Original Research
Quantum Machine Learning and Data Re-Uploading: Evaluation on Benchmark and Laboratory Medicine Data Sets
Durant TJS, Lee SJ, Dudgeon SN, Knight E, Nelson B, Young HP, Ohno-Machado L, Schulz WL. Quantum Machine Learning and Data Re-Uploading: Evaluation on Benchmark and Laboratory Medicine Data Sets. Clinical Chemistry 2026, hvaf192. DOI: 10.1093/clinchem/hvaf192.
Peer-Reviewed Original Research
The dark side of the dot: How melanosomes dim T cell activity.
Wang R, Caron E. The dark side of the dot: How melanosomes dim T cell activity. Sci Immunol 2026, 11: eaef9200. PMID: 41650250, DOI: 10.1126/sciimmunol.aef9200.
Commentaries, Editorials and Letters
Trend-Aligner: A Retention Time Modeling-Based Feature Alignment Method for Untargeted LC-MS Data Analysis.
Wang R, Ren S, Caron E, Lu M, Jiang H, Wang X, An S, Xie C, Tong J, Chen J, Hong J, Zhang K, Yu C. Trend-Aligner: A Retention Time Modeling-Based Feature Alignment Method for Untargeted LC-MS Data Analysis. Anal Chem 2026 PMID: 41610014, DOI: 10.1021/acs.analchem.5c05354.
Peer-Reviewed Original Research
Dose-dependent activation of the Hippo pathway by Type I and Type III interferons suppresses tissue repair by human bronchial epithelial cells.
Subramaniam KV, Lim HJ, Wang B, Mihaylova VT, Thompson EN, Krause DS, Foxman EF. Dose-dependent activation of the Hippo pathway by Type I and Type III interferons suppresses tissue repair by human bronchial epithelial cells. PLoS Biol 2026, 24: e3003615. PMID: 41587178, DOI: 10.1371/journal.pbio.3003615.
Peer-Reviewed Original Research
Emerging Technologies in Proteomics: Insights from the HUPO ETC Webinar Series.
Chazarin B, Chatterjee S, Collins BC, Fert-Bober J, Huang S, Kundu DJ, Lin Q, Liu Y, Low TY, Saba J, Sabido E, Searle BC, Palmisano G. Emerging Technologies in Proteomics: Insights from the HUPO ETC Webinar Series. J Proteome Res 2026, 25: 1-3. PMID: 41479349, DOI: 10.1021/acs.jproteome.5c01013.
Peer-Reviewed Original Research
Rhinovirus triggers distinct host responses through differential engagement of epithelial innate immune signaling
Wang B, Amat JA, Mihaylova VT, Kong Y, Wang G, Foxman EF. Rhinovirus triggers distinct host responses through differential engagement of epithelial innate immune signaling. Cell Press Blue 2026, 100001. DOI: 10.1016/j.cpblue.2025.100001.
Peer-Reviewed Original Research
Hierarchical structure-guided high-dimensional multi-view clustering
Jiang J, Fang K, Ma S, Zhang Q. Hierarchical structure-guided high-dimensional multi-view clustering. Journal Of Multivariate Analysis 2026, 211: 105488. DOI: 10.1016/j.jmva.2025.105488.
Peer-Reviewed Original Research
Concepts

2025

See All Publications

Publications

2026

Balance Versus Bias: Correcting Misinformation About the 2025 ATS Community-Acquired Pneumonia Guidelines

Early-activated extracellular matrix proteins shape the metabolic and spatial dynamics of the kidney fibrotic microenvironment.

Quantum Machine Learning and Data Re-Uploading: Evaluation on Benchmark and Laboratory Medicine Data Sets

The dark side of the dot: How melanosomes dim T cell activity.

Trend-Aligner: A Retention Time Modeling-Based Feature Alignment Method for Untargeted LC-MS Data Analysis.

Dose-dependent activation of the Hippo pathway by Type I and Type III interferons suppresses tissue repair by human bronchial epithelial cells.

Emerging Technologies in Proteomics: Insights from the HUPO ETC Webinar Series.

Rhinovirus triggers distinct host responses through differential engagement of epithelial innate immune signaling

Hierarchical structure-guided high-dimensional multi-view clustering

2025

The GF-NEO discovery platform unveils a [KQE][DG] sequence motif within fusion neoantigens in pediatric cancer.

A ribosome-bound pseudoknot in the HCV coding region stimulates viral growth by tuning viral translation

MTHFR allele and one-carbon metabolic profile predict severity of COVID-19

Unravelling the Immunological Enigma of Sickle Cell Disease: Current Understanding and Future Directions

Emicizumab for preventing intracranial hemorrhage in infants with severe hemophilia A: a cost-effectiveness analysis

Barriers perpetuating the lack of casualty data from neglected conflict settings

Integrative single-cell RNA and ATAC sequencing reveals the impact of chronic cigarette smoking on lung epithelial responses to influenza and hyperoxia

Pre-existing and early cellular immune factors correlate with functionally complete protection against primary controlled human SARS-CoV-2 infection

Epidemiology and severity risk factors of dengue virus infection during the 2023-2024 outbreak in Colombia

AI immunologists are here: Are they ready for prime time?

The lingering shadow of epidemics: post-acute sequelae across history

Matrix Stiffness Directs Early Injury and Ketogenesis Programs to Prime Kidney Repair.

Dysregulated alveolar type 2 epithelial cell proteostasis promotes fibrogenic macrophage migration inhibitory factor–CD74 signaling

Matrix Stiffness Directs Early Injury and Ketogenesis Programs to Prime Kidney Repair

Leading Cause of Death and Life Expectancy Among US Superagers

Network-based hierarchical heterogeneity analysis and applications to cancer omics data