2024
π-HuB: the proteomic navigator of the human body
He F, Aebersold R, Baker M, Bian X, Bo X, Chan D, Chang C, Chen L, Chen X, Chen Y, Cheng H, Collins B, Corrales F, Cox J, E W, Van Eyk J, Fan J, Faridi P, Figeys D, Gao G, Gao W, Gao Z, Goda K, Goh W, Gu D, Guo C, Guo T, He Y, Heck A, Hermjakob H, Hunter T, Iyer N, Jiang Y, Jimenez C, Joshi L, Kelleher N, Li M, Li Y, Lin Q, Liu C, Liu F, Liu G, Liu Y, Liu Z, Low T, Lu B, Mann M, Meng A, Moritz R, Nice E, Ning G, Omenn G, Overall C, Palmisano G, Peng Y, Pineau C, Poon T, Purcell A, Qiao J, Reddel R, Robinson P, Roncada P, Sander C, Sha J, Song E, Srivastava S, Sun A, Sze S, Tang C, Tang L, Tian R, Vizcaíno J, Wang C, Wang C, Wang X, Wang X, Wang Y, Weiss T, Wilhelm M, Winkler R, Wollscheid B, Wong L, Xie L, Xie W, Xu T, Xu T, Yan L, Yang J, Yang X, Yates J, Yun T, Zhai Q, Zhang B, Zhang H, Zhang L, Zhang L, Zhang P, Zhang Y, Zheng Y, Zhong Q, Zhu Y. π-HuB: the proteomic navigator of the human body. Nature 2024, 636: 322-331. PMID: 39663494, DOI: 10.1038/s41586-024-08280-5.Peer-Reviewed Original Research
2023
A basic phosphoproteomic-DIA workflow integrating precise quantification of phosphosites in systems biology
Di Y, Li W, Salovska B, Ba Q, Hu Z, Wang S, Liu Y. A basic phosphoproteomic-DIA workflow integrating precise quantification of phosphosites in systems biology. Biophysics Reports 2023, 9: 82-98. PMID: 37753060, PMCID: PMC10518521, DOI: 10.52601/bpr.2023.230007.Peer-Reviewed Original ResearchPost-translational modificationsData-independent acquisitionSystems biologySite-specific phosphorylation eventsImportant post-translational modificationMost human proteinsCritical protein functionsPhosphorylation eventsProtein functionPhosphoproteomic studiesPhosphoproteomic analysisBioinformatics AdvancesHuman proteinsMass spectrometry technologyBioinformatics analysisLarge-scale quantificationExperimental workflowHigh-resolution mass spectrometry technologySpectrometry technologyPhosphoproteomicsPhosphorylationBiologyProteinSystems medicineSingle experiment
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