2023
Proceedings of the Association for Pathology Informatics Bootcamp 2022
Obstfeld A, Brodsky V, Carter A, Gershkovich P, Haymond S, Levy B, Sinard J, Sellers D, Stoffel M, Jackups R. Proceedings of the Association for Pathology Informatics Bootcamp 2022. Journal Of Pathology Informatics 2023, 14: 100331. PMID: 37705688, PMCID: PMC10495674, DOI: 10.1016/j.jpi.2023.100331.Peer-Reviewed Original ResearchMeasuring social and emotional learning implementation in a research-practice partnership
Grant N, Meyer J, Strambler M. Measuring social and emotional learning implementation in a research-practice partnership. Frontiers In Psychology 2023, 14: 1052877. PMID: 37564314, PMCID: PMC10410557, DOI: 10.3389/fpsyg.2023.1052877.Peer-Reviewed Original Research
2022
Comprehensively identifying Long Covid articles with human-in-the-loop machine learning
Leaman R, Islamaj R, Allot A, Chen Q, Wilbur W, Lu Z. Comprehensively identifying Long Covid articles with human-in-the-loop machine learning. Patterns 2022, 4: 100659. PMID: 36471749, PMCID: PMC9712067, DOI: 10.1016/j.patter.2022.100659.Peer-Reviewed Original Research
2021
A Living, Interactive Systematic Review and Network Meta-analysis of First-line Treatment of Metastatic Renal Cell Carcinoma
Riaz I, He H, Ryu A, Siddiqi R, Naqvi S, Yao Y, Husnain M, Narasimhulu D, Mathew J, Sipra Q, Vandvik P, Joseph R, Liu H, Wang Z, Herasevich V, Singh P, Hussain S, Ho T, Bryce A, Pagliaro L, Murad M, Costello B. A Living, Interactive Systematic Review and Network Meta-analysis of First-line Treatment of Metastatic Renal Cell Carcinoma. European Urology 2021, 80: 712-723. PMID: 33824031, DOI: 10.1016/j.eururo.2021.03.016.Peer-Reviewed Original ResearchConceptsInteractive tableGraphical user interfaceUser interfaceUser-friendly formatAdvanced programmingDisplay resultsInteractive mannerInteractive reviewNetworkSearch strategyCurrent approachesSparse direct evidenceMetastatic renal cell carcinomaData extractionTableFirst-line treatmentProgrammingUntreated metastatic renal cell carcinomaFormatMultiple treatment optionsRenal cell carcinomaInherent biasesAdverse eventsComplete responseFramework
2017
Flow Network Based Cardiac Motion Tracking Leveraging Learned Feature Matching
Parajuli N, Lu A, Stendahl J, Zontak M, Boutagy N, Alkhalil I, Eberle M, Lin B, O’Donnell M, Sinusas A, Duncan J. Flow Network Based Cardiac Motion Tracking Leveraging Learned Feature Matching. Lecture Notes In Computer Science 2017, 10434: 279-286. DOI: 10.1007/978-3-319-66185-8_32.Peer-Reviewed Original ResearchCardiac motion trackingNeural networkMotion trackingTedious feature engineeringSiamese neural networkMotion tracking methodFeature engineeringSiamese networkFeature matchingGraph nodesImage patchesSpatiotemporal problemsTracking algorithmTracking methodEdge weightsNetworkLinear programmingConsistent constraintsAdditional important contributionTrackingAlgorithmDatasetProgrammingNodesMatching
2014
Low-Rank Modeling and Its Applications in Image Analysis
Zhou X, Yang C, Zhao H, Yu W. Low-Rank Modeling and Its Applications in Image Analysis. ACM Computing Surveys 2014, 47: 1-33. DOI: 10.1145/2674559.Peer-Reviewed Original ResearchLow-rank modelingLow-rank matrix recoveryExact low-rank matrix recoveryImage analysisMatrix recoveryClass of methodsComputer visionLow-rank matrixCollaborative filteringData miningArt algorithmsConvex programmingRank modelingMatrix completionNumerical experimentsAlgorithmGreat successRelated applicationsSignal processingModelingVariables of interestApplicationsMiningProgrammingMore attention
2003
Smoothed analysis of termination of linear programming algorithms
Spielman D, Teng S. Smoothed analysis of termination of linear programming algorithms. Mathematical Programming 2003, 97: 375-404. DOI: 10.1007/s10107-003-0448-9.Peer-Reviewed Original Research
2001
Easing the transition between attribute-value databases and conventional databases for scientific data.
Nadkarni P, Marenco L. Easing the transition between attribute-value databases and conventional databases for scientific data. AMIA Annual Symposium Proceedings 2001, 483-7. PMID: 11825235, PMCID: PMC2243470.Peer-Reviewed Original ResearchConceptsEAV/CRData transfer toolsData transfer programProgrammer interventionConventional databasesLegacy systemsDB technologyDevelopment frameworkGeneric toolData sourcesDifferent representationsConventional dataAnalytical packageDatabaseScientific dataTransfer toolsScientific databasesTransfer taskToolProgrammingTaskCurrent limitationsWide varietyTechnologyFrameworkAn implementation framework for GEM encoded guidelines.
Gershkovich P, Shiffman RN. An implementation framework for GEM encoded guidelines. AMIA Annual Symposium Proceedings 2001, 204-8. PMID: 11825181, PMCID: PMC2243348.Peer-Reviewed Original ResearchConceptsGuideline Elements ModelDecision support informationPublishing frameworkEnd usersComputable formatSupport informationImplementation frameworkIntegration of knowledgeClinical systemsFormatImplementationPresentation formatGuideline knowledgeFeasibility of implementationFrameworkUsersGuideline contentProgrammingMain obstaclesMarkupLogicFunctionalityClinical knowledgeKnowledgeGuideline authors
1999
A New Approach to 3D Sulcal Ribbon Finding from MR Images
Zeng X, Staib L, Schultz R, Tagare H, Win L, Duncan J. A New Approach to 3D Sulcal Ribbon Finding from MR Images. Lecture Notes In Computer Science 1999, 1679: 148-157. DOI: 10.1007/10704282_16.Peer-Reviewed Original ResearchGeneral segmentation methodsMR brain imagesDistance functionLittle manual interventionDeformable surface modelSegmentation workSegmentation methodManual interventionNew approachBrain imagesContour modelCortex segmentationDynamic programmingLevel setsNatural followImagesMR imagesControl problemSurface modelSegmentationQuantitative resultsProgramming
1996
Mathematical programming for the efficient allocation of health care resources
Stinnett A, Paltiel A. Mathematical programming for the efficient allocation of health care resources. Journal Of Health Economics 1996, 15: 641-653. PMID: 10164046, DOI: 10.1016/s0167-6296(96)00493-6.Peer-Reviewed Original ResearchConceptsGeneral mathematical programming frameworkMathematical programming frameworkMathematical programmingOptimization techniquesRestrictive assumptionsProgramming frameworkExplicit identificationEfficient allocationResource allocation processConstraintsBudget constraintsAllocation processAllocationProgrammingAssumptionEstimation of motion boundary location and optical flow using dynamic programming
Papademetris X, Belhumeur P. Estimation of motion boundary location and optical flow using dynamic programming. 1996, 1: 509-512 vol.1. DOI: 10.1109/icip.1996.559545.Peer-Reviewed Original Research
1992
Energy-minimizing deformable grids for tracking tagged MR cardiac images
Amini A, Shi P, Constable R, Johnson K, Duncan J, Gore J. Energy-minimizing deformable grids for tracking tagged MR cardiac images. 1992, 651-654. DOI: 10.1109/cic.1992.269374.Peer-Reviewed Original Research
1990
A parallel software architecture for building intelligent medical monitors
Factor M, Sittig D, Cohn A, Gelernter D, Miller P, Rosenbaum S. A parallel software architecture for building intelligent medical monitors. International Journal Of Clinical Monitoring And Computing 1990, 7: 117-128. PMID: 2373942, DOI: 10.1007/bf01724205.Peer-Reviewed Original ResearchConceptsParallel software architectureSoftware architectureParallel computing hardwareMedical monitorNumber of devicesProcess trellisParallel programmingApplication programmersHigh-level summaryIntelligent monitorComputing hardwarePerformance gainsParallel structureArchitectureData calculationSymbolic classificationCardiovascular monitorsProgrammersMonitorHardwareProgrammingPreliminary testingTrellisComplexityClassification
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