2021
Spillover of zoonotic pathogens: A review of reviews
Sánchez C, Venkatachalam‐Vaz J, Drake J. Spillover of zoonotic pathogens: A review of reviews. Zoonoses And Public Health 2021, 68: 563-577. PMID: 34018336, DOI: 10.1111/zph.12846.Peer-Reviewed Original Research
2019
A linked data graph approach to integration of immunological data
Bukhari SAC, Mandell J, Kleinstein SH, Cheung KH. A linked data graph approach to integration of immunological data. 2024 IEEE International Conference On Bioinformatics And Biomedicine (BIBM) 2019, 00: 1742-1749. PMID: 34707915, PMCID: PMC8547546, DOI: 10.1109/bibm47256.2019.8982986.Peer-Reviewed Original ResearchGraph databaseDatabase technologyGraph-based query languageNatural language query interfaceNoSQL database technologyGraph-based databasesNeo4j graph databaseSQL database technologyHeterogeneous biological dataWeb-based dashboardQuery interfaceQuery languageData retrievalData integrationMultiple data typesBiological databasesData repositoryData typesResponse measurement dataGraph approachPathway dataData setsUsersBiological dataScalable method
2011
Genetic analysis of biological pathway data through genomic randomization
Yaspan B, Bush W, Torstenson E, Ma D, Pericak-Vance M, Ritchie M, Sutcliffe J, Haines J. Genetic analysis of biological pathway data through genomic randomization. Human Genetics 2011, 129: 563-571. PMID: 21279722, PMCID: PMC3107984, DOI: 10.1007/s00439-011-0956-2.Peer-Reviewed Original ResearchConceptsGenome-wide association studiesGWAS datasetsWide association studyRandomization Incorporating StructurePotential epistatic effectsGWAS resultsGene sizeSNP coverageKEGG databaseBiological pathway dataSingle locusEpistatic effectsGenetic analysisPathway analysisAssociation studiesSNP allelesAssociation resultsAssociation analysis methodLinkage disequilibriumSignificant enrichmentPathway dataPathway sizeVariants of interestMultiple testing correctionSmall main effect
2009
Semantic Web-Based Integration of Cancer Pathways and Allele Frequency Data
Holford ME, Rajeevan H, Zhao H, Kidd KK, Cheung KH. Semantic Web-Based Integration of Cancer Pathways and Allele Frequency Data. Cancer Informatics 2009, 8: cin.s1006. PMID: 19458791, PMCID: PMC2664696, DOI: 10.4137/cin.s1006.Peer-Reviewed Original ResearchRule-based inference engineRDF Query LanguageSemantic Web technologiesWeb Ontology LanguageWeb-based integrationPathway dataQuery languageSemantic technologiesWeb technologiesOntology LanguageOracle databaseInference engineSort of informationPathway resourcesPathway knowledgeLanguageQueriesTechnologyBioPAXDatabaseAllele frequency databasesPersonalized medicineFrequency databaseResearch questionsEngine
2004
VitaPad: visualization tools for the analysis of pathway data
Holford M, Li N, Nadkarni P, Zhao H. VitaPad: visualization tools for the analysis of pathway data. Bioinformatics 2004, 21: 1596-1602. PMID: 15564306, DOI: 10.1093/bioinformatics/bti153.Peer-Reviewed Original ResearchConceptsCross-platform applicationHigh-resolution graphicsGraph layout algorithmsBiological pathway diagramsPathway diagramsXML formatUser interfaceLayout algorithmVisualization toolsIntuitive controlEasy extensionPathway dataGraphicsUsersMicroarray dataAlgorithmSoftwareToolFormatDataHongyuInterfaceIntegrationPackageApplications
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