2023
AIONER: all-in-one scheme-based biomedical named entity recognition using deep learning
Luo L, Wei C, Lai P, Leaman R, Chen Q, Lu Z. AIONER: all-in-one scheme-based biomedical named entity recognition using deep learning. Bioinformatics 2023, 39: btad310. PMID: 37171899, PMCID: PMC10212279, DOI: 10.1093/bioinformatics/btad310.Peer-Reviewed Original ResearchConceptsDeep learningEntity recognitionTraining dataEntity typesLabeling training dataNatural language textText mining tasksSignificant domain expertiseMulti-task learningMining tasksInformation extractionBioNER taskDomain expertiseBiomedical entitiesIndependent tasksSource codeBenchmark tasksLanguage textBiomedical textArt approachesAccurate annotationExternal dataData scarcityTaskLearning
2022
Biomedical Literature Mining and Its Components
Raja K. Biomedical Literature Mining and Its Components. Methods In Molecular Biology 2022, 2496: 1-16. PMID: 35713856, DOI: 10.1007/978-1-0716-2305-3_1.Peer-Reviewed Original ResearchConceptsMining protocolInformation retrieval approachBiomedical literaturePublished biomedical articlesUser queriesMining tasksInformation retrievalInformation extractionKnowledge discoveryBiomedical textBiomedical entitiesBiomedical articlesRetrieval approachAutomatic extractionRetrieving informationMining approachRelevant documentsPubMed titlesManual extractionMiningSource of knowledgeDrug mentionsInformationExponential ratePopulation information
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