2023
Cooperative ligand binding to a double-stranded Ising lattice—Application to cofilin binding to actin filaments
Cao W, Taylor E, De La Cruz E. Cooperative ligand binding to a double-stranded Ising lattice—Application to cofilin binding to actin filaments. PNAS Nexus 2023, 2: pgad331. PMID: 37885622, PMCID: PMC10599439, DOI: 10.1093/pnasnexus/pgad331.Peer-Reviewed Original ResearchExact solutionCluster sizeIsing latticeLattice systemsBest fit parametersTransfer matrix methodInfinite onesChemical physicsMatrix methodCooperative ligandFit parametersLigand binding interactionsLinear polymersAdditional experimental informationBinding interactionsIsingSolutionDouble-stranded modelAnalysis of varietyLigandsElectron microscopyPolymersExperimental informationExperimental observationsPhysics
2022
An unbiased kinship estimation method for genetic data analysis
Jiang W, Zhang X, Li S, Song S, Zhao H. An unbiased kinship estimation method for genetic data analysis. BMC Bioinformatics 2022, 23: 525. PMID: 36474154, PMCID: PMC9727941, DOI: 10.1186/s12859-022-05082-2.Peer-Reviewed Original ResearchConceptsRigorous mathematical proofGenetic data analysisReal data analysisUnbiased estimation methodEstimation methodIndividual-level genotype dataSample correlation coefficientMathematical proofMathematical derivationMean square errorCoefficient estimationMatrix methodEstimation accuracyEstimation biasHeritability estimationRoot mean square errorData analysisSquare errorAccurate estimatesEstimationUKINVariances of genotypesSpurious associationsKinship coefficientsEstimates
1999
Ligand binding on ladder lattices
Kong Y. Ligand binding on ladder lattices. Biophysical Chemistry 1999, 81: 7-21. PMID: 17030328, DOI: 10.1016/s0301-4622(99)00078-2.Peer-Reviewed Original ResearchPartition functionLinear ladderTwo-dimensional laddersCases explicit formulasClosed-form formulaClosed-form expressionsTransfer matrix methodLadder latticeOne-dimensional modelExplicit formulaAnalytical solutionTwo-dimensional modelRecurrence relationsMatrix methodNumerical resultsGeneral situationGeneral relationGeneral methodEnd slopeTest casesExperimental dataFormulaModelLongitudinal directionMatrix Methods for Estimating Odds Ratios with Misclassified Exposure Data: Extensions and Comparisons
Morrissey M, Spiegelman D. Matrix Methods for Estimating Odds Ratios with Misclassified Exposure Data: Extensions and Comparisons. Biometrics 1999, 55: 338-344. PMID: 11318185, DOI: 10.1111/j.0006-341x.1999.00338.x.Peer-Reviewed Original Research
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