2024
Uncertainty-Aware Deep Learning Characterization of Knee Radiographs for Large-Scale Registry Creation
Mulford K, Grove A, Kaji E, Rouzrokh P, Roman R, Kremers M, Maradit Kremers H, Taunton M, Wyles C. Uncertainty-Aware Deep Learning Characterization of Knee Radiographs for Large-Scale Registry Creation. The Journal Of Arthroplasty 2024, 40: 1232-1238. PMID: 39477040, PMCID: PMC11985313, DOI: 10.1016/j.arth.2024.10.103.Peer-Reviewed Original ResearchConceptsObject detection modelDetection modelF1 scoreConformal predictionAverage precisionOut-of-domain imagesOut-of-domainPer-class F1-scoresUncertainty-awareMultilabel classifierEfficientNet modelIngestion pipelineLabel outputsClassification modelClassifierDomain detectionHeld-outMultilabelUncertainty quantificationModel performanceKnee imagesEfficientNetLarge-scaleHardwarePrecision
2018
DataMed – an open source discovery index for finding biomedical datasets
Chen X, Gururaj A, Ozyurt B, Liu R, Soysal E, Cohen T, Tiryaki F, Li Y, Zong N, Jiang M, Rogith D, Salimi M, Kim H, Rocca-Serra P, Gonzalez-Beltran A, Farcas C, Johnson T, Margolis R, Alter G, Sansone S, Fore I, Ohno-Machado L, Grethe J, Xu H. DataMed – an open source discovery index for finding biomedical datasets. Journal Of The American Medical Informatics Association 2018, 25: 300-308. PMID: 29346583, PMCID: PMC7378878, DOI: 10.1093/jamia/ocx121.Peer-Reviewed Original ResearchIngestion pipelineBiomedical datasetsSearch enginesBiomedical domainAdvanced natural language processingRelevant datasetsUser-entered queryData discovery systemUnified metadata modelData ingestion pipelinesNatural language processingOpen-source packageRetrieval engineTerminology servicesMetadata modelMetadata informationDiscovery systemData reuseDataMedBenchmark datasetsBiomedical dataData indexAverage precisionLanguage processingSource package
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