2025
A Concordance Study Among 26 NGS Laboratories Participating in the National Cancer Institute-Molecular Analysis for Therapy Choice (NCI-MATCH) Clinical Trial.
Zane L, Yee L, Chang T, Sklar J, Yang G, Wen J, Li P, Harrington R, Sims D, Harper K, Trent J, LoBello J, Szelinger S, Benson K, Zeng J, Poorman K, Xu D, Frampton G, Pavlick D, Miller V, Tandon B, Swat W, Weiss L, Funari V, Conroy J, Prescott J, Chandra P, Ma C, Champion K, Baschkopf G, Fesko Y, Freitas T, Tomlins S, Hovelson D, White K, Sorrells S, Tell R, Beaubier N, King D, Li L, Kelly K, Uvalic J, Meyers B, Kolhe R, Lindeman N, Baltay M, Sholl L, Lopategui J, Vail E, Zhang W, Telatar M, Afkhami M, Hsiao S, Mansukhani M, Adams E, Jiang L, Aldape K, Raffeld M, Xi L, Stehr H, Segal J, Aisner D, Davies K, Brown N, Livingston R, Konnick E, Song W, Solomon J, Walther Z, McShane L, Harris L, Chen A, Tsongalis G, Hamilton S, Flaherty K, O'Dwyer P, Conley B, Patton D, Iafrate A, Williams P, Tricoli J, Karlovich C. A Concordance Study Among 26 NGS Laboratories Participating in the National Cancer Institute-Molecular Analysis for Therapy Choice (NCI-MATCH) Clinical Trial. Clinical Cancer Research 2025 PMID: 40465838, DOI: 10.1158/1078-0432.ccr-24-2188.Peer-Reviewed Original ResearchVariant detectionVariant reportingEstimates of copy numberTarget enrichment methodLow-complexity regionsCentral laboratoryNational Cancer Institute-Molecular AnalysisNCI-MATCH trialVariant interpretationVariant classesCopy numberBioinformatics analysisCNV reporterNGS assayCLIA-certified laboratoryEnrichment methodNGSHybridization captureIndelsNCI-MATCHTumor profiling testsCell linesTherapy choiceClinical samplesSNVs
2012
Next-generation sequencing of FFPE solid tumor specimens for clinical use.
Yelensky R, Wang K, Dogan S, Borsu L, Frampton G, Lipson D, Stephens P, Bastian B, Klimstra D, Ladanyi M, Cronin M, Hedvat C, Berger M. Next-generation sequencing of FFPE solid tumor specimens for clinical use. Journal Of Clinical Oncology 2012, 30: 10524-10524. DOI: 10.1200/jco.2012.30.15_suppl.10524.Peer-Reviewed Original ResearchNext-generation sequencingCopy changesNext-generation sequencing approachGenomic alterationsLoss-of-function variantsMutant allele frequencyIndividual base pairsConcordant callsFFPE specimensSequence dataGene characterizationLibrary constructionCancer genesBase pairsSolid tumor specimensAllele frequenciesSomatic alterationsDetect mutationsPotential clinical roleInfluence treatment decisionsFusion geneExonMutationsAverage coverageHybridization capture
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