2024
Interpretable Cognitive Ability Prediction: A Comprehensive Gated Graph Transformer Framework for Analyzing Functional Brain Networks
Qu G, Orlichenko A, Wang J, Zhang G, Xiao L, Zhang K, Wilson T, Stephen J, Calhoun V, Wang Y. Interpretable Cognitive Ability Prediction: A Comprehensive Gated Graph Transformer Framework for Analyzing Functional Brain Networks. IEEE Transactions On Medical Imaging 2024, 43: 1568-1578. PMID: 38109241, PMCID: PMC11090410, DOI: 10.1109/tmi.2023.3343365.Peer-Reviewed Original ResearchConceptsGraph transformation frameworkBrain imaging datasetsFunctional brain networksPhiladelphia Neurodevelopmental CohortConvolutional deep learningFeature embeddingPropagation weightsGraph embeddingHuman Connectome ProjectAttention mechanismImage datasetsDeep learningGraph transformationFunctional connectivityAnalyze functional brain networksTransformation frameworkDiffusion strategyBrain networksPositional encodingSpatial knowledgePrediction accuracyIndividual cognitive abilitiesEmbeddingNetworkGraph
2023
Network embedding unveils the hidden interactions in the mammalian virome
Poisot T, Ouellet M, Mollentze N, Farrell M, Becker D, Brierley L, Albery G, Gibb R, Seifert S, Carlson C. Network embedding unveils the hidden interactions in the mammalian virome. Patterns 2023, 4: 100738. PMID: 37409053, PMCID: PMC10318366, DOI: 10.1016/j.patter.2023.100738.Peer-Reviewed Original ResearchMammalian viromeViral genomic featuresHost-virus interactionsGraph embeddingGenomic featuresNetwork science problemUnder-characterizedFundamental biologyHuman infectionsViromeRecommender systemsDiscovery effortsAmazon basinDisease emergenceHidden interactionsImputation algorithmData biasNetworkLinear filterScience problems
2020
Uncovering the Folding Landscape of RNA Secondary Structure Using Deep Graph Embeddings
Castro E, Benz A, Tong A, Wolf G, Krishnaswamy S. Uncovering the Folding Landscape of RNA Secondary Structure Using Deep Graph Embeddings. 2020, 00: 4519-4528. DOI: 10.1109/bigdata50022.2020.9378305.Peer-Reviewed Original Research
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