2020
TopicNet: a framework for measuring transcriptional regulatory network change
Lou S, Li T, Kong X, Zhang J, Liu J, Lee D, Gerstein M. TopicNet: a framework for measuring transcriptional regulatory network change. Bioinformatics 2020, 36: i474-i481. PMID: 32657410, PMCID: PMC7355251, DOI: 10.1093/bioinformatics/btaa403.Peer-Reviewed Original ResearchConceptsRegulatory network changesTranscription factorsCellular statesDifferent regulatory programsCollection of genesDifferent cellular statesParticular cellular stateParticular transcription factorsRegulatory network connectivityKey transcription factorGene expression dataChromatin immunoprecipitationRegulatory networksCell statesExpression dataRegulatory programsHuman cellsDifferential survivalDiverse groupSupplementary dataDynamic changesLoss of targetImmunoprecipitationGenesActivity differences
2013
The Biology of the PmrA/PmrB Two-Component System: The Major Regulator of Lipopolysaccharide Modifications
Chen HD, Groisman EA. The Biology of the PmrA/PmrB Two-Component System: The Major Regulator of Lipopolysaccharide Modifications. Annual Review Of Microbiology 2013, 67: 83-112. PMID: 23799815, PMCID: PMC8381567, DOI: 10.1146/annurev-micro-092412-155751.Peer-Reviewed Original ResearchConceptsPmrA/PmrBTwo-component systemPmrA/PmrB systemMajor regulatorEnteric pathogen Salmonella entericaGene expression outputPathogen Salmonella entericaTranscriptional regulatorsExpression outputEcological nichesOuter membraneRelated bacteriaLPS modificationsExtent bacteriaLipopolysaccharide modificationDifferential survivalRegulatorHost immune systemNegative bacteriaSalmonella entericaBacteriaBiologyPmrBQuantitative differencesImmune system
1997
Genetic Differentiation Within the European Sea Bass (D. labrax) as Revealed by RAPD-PCR Assays
Caccone A, Allegrucci G, Fortunato C, Sbordoni V. Genetic Differentiation Within the European Sea Bass (D. labrax) as Revealed by RAPD-PCR Assays. Journal Of Heredity 1997, 88: 316-324. DOI: 10.1093/oxfordjournals.jhered.a023109.Peer-Reviewed Original ResearchGenetic differentiationRAPD-PCR assayEuropean sea bassRAPD markersPopulation genetic differentiationSea bassFreshwater acclimationAllozyme dataMicrosatellite surveyRAPD variationCongeneric speciesGenomic regionsMediterranean localitiesFish speciesHatchery samplesRAPD differentiationAtlantic samplesRAPD bandsWild samplesDNA polymorphismsSame speciesAcclimation experimentsDifferential survivalMediterranean populationsEcological components
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