2023
ILIAD: a suite of automated Snakemake workflows for processing genomic data for downstream applications
Herrick N, Walsh S. ILIAD: a suite of automated Snakemake workflows for processing genomic data for downstream applications. BMC Bioinformatics 2023, 24: 424. PMID: 37940870, PMCID: PMC10633908, DOI: 10.1186/s12859-023-05548-x.Peer-Reviewed Original ResearchConceptsRaw genomic dataSoftware toolsHigh-performance computing clusterOwn big dataRaw data typesVariant call format filesOpen-source suiteBioinformatics software toolsDownstream applicationsDocker containersGenomic dataLocal machineComputing clusterBig dataConfiguration filesJob executionWindows platformData workflowIntermediate filesSingle commandFormat fileReproducible workflowsVCF filesData typesStorage limitations
2012
A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework
Bandrowski A, Cachat J, Li Y, Müller H, Sternberg P, Ciccarese P, Clark T, Marenco L, Wang R, Astakhov V, Grethe J, Martone M. A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework. Database 2012, 2012: bas005. PMID: 22434839, PMCID: PMC3308161, DOI: 10.1093/database/bas005.Peer-Reviewed Original ResearchConceptsNeuroscience Information FrameworkSearch engine systemInformation frameworkManual curation effortsNumber of resourcesAutomated annotation toolWeb servicesResource discoveryDynamic contentConfiguration filesValuable analyticsSearch enginesSoftware toolsCuration pipelineAnnotation toolCuration processInformation resourcesCuration effortsResource ownersHybrid humanNeuroscience dataAddress accessibilityLarger scientific communityManual curationDisplay data
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