2014
GAMUT: GPU accelerated microRNA analysis to uncover target genes through CUDA-miRanda
Wang S, Kim J, Jiang X, Brunner S, Ohno-Machado L. GAMUT: GPU accelerated microRNA analysis to uncover target genes through CUDA-miRanda. BMC Medical Genomics 2014, 7: s9. PMID: 25077821, PMCID: PMC4101446, DOI: 10.1186/1755-8794-7-s1-s9.Peer-Reviewed Original ResearchConceptsCompute Unified Device ArchitectureGraphics processing unitsHigh performance computeParallel computingNVIDIA Compute Unified Device ArchitectureUnified Device ArchitectureMultiple test datasetsGiga cell updatesTimes performance gainsSmith-Waterman algorithmGPU developersSW implementationSource codeExecution timeGHz CPUIntel XeonLong reference sequencesProcessing unitTarget identification algorithmCell updatesTest datasetProjects/Such large scalePerformance gainsBiomedical research community
2010
A VTK-based, CUDA-optimized Non-Parametric Vessel Detection Method
Alpoge L, Joshi A, Scheinost D, Onofrey J, Qian X, Papademetris X. A VTK-based, CUDA-optimized Non-Parametric Vessel Detection Method. The VTK Journal 2010 DOI: 10.54294/z1w0uu.Chapters
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