2020
Bridging the Collaboration Gap: Real-time Identification of Clinical Specimens for Biomedical Research
Durant TJS, Gong G, Price N, Schulz WL. Bridging the Collaboration Gap: Real-time Identification of Clinical Specimens for Biomedical Research. Journal Of Pathology Informatics 2020, 11: 14. PMID: 32477620, PMCID: PMC7245342, DOI: 10.4103/jpi.jpi_15_20.Peer-Reviewed Original ResearchOpen source applicationsReal timeReal-time environmentDifferent use casesE-mail notificationData architectureUnstructured dataCommodity hardwareUse casesMinimal overheadReal-time identificationAdditional data typesData typesReal-world clinical dataCollaboration gapsClinical workflowSpecimen metadataTypical approachShort stability timeHealth platformNovel approachSpecimen retentionFuture workElasticsearchNotification
2014
Population-based structural variation discovery with Hydra-Multi
Lindberg MR, Hall IM, Quinlan AR. Population-based structural variation discovery with Hydra-Multi. Bioinformatics 2014, 31: 1286-1289. PMID: 25527832, PMCID: PMC4393510, DOI: 10.1093/bioinformatics/btu771.Peer-Reviewed Original ResearchConceptsNumber of genomesSV analysisStructural variation discoveryStructural variant detectionHuman genomeCancer Genome AtlasVariation discoveryGenomic rearrangementsGenome ProjectSequence alignmentSignal integrationIndel discoveryGenome AtlasGenomeMultiple individualsSupplementary dataSize variabilityVariant detectionCommodity hardwarePoor scalabilityAvailable datasetsAnalysis workflowScalabilityExtant toolsDiscovery
2007
X!!Tandem, an Improved Method for Running X!Tandem in Parallel on Collections of Commodity Computers
Bjornson RD, Carriero NJ, Colangelo C, Shifman M, Cheung KH, Miller PL, Williams K. X!!Tandem, an Improved Method for Running X!Tandem in Parallel on Collections of Commodity Computers. Journal Of Proteome Research 2007, 7: 293-299. PMID: 17902638, PMCID: PMC3863625, DOI: 10.1021/pr0701198.Peer-Reviewed Original Research
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