nipalsMCIA: flexible multi-block dimensionality reduction in R via nonlinear iterative partial least squares
Mattessich M, Reyna J, Aron E, Ay F, Kilmer M, Kleinstein S, Konstorum A. nipalsMCIA: flexible multi-block dimensionality reduction in R via nonlinear iterative partial least squares. Bioinformatics 2024, 41: btaf015. PMID: 39799512, PMCID: PMC11783316, DOI: 10.1093/bioinformatics/btaf015.Peer-Reviewed Original ResearchConceptsIterative partial least squaresNonlinear iterative partial least squaresDimensionality reductionMultiple co-inertia analysisJoint dimensionality reductionSignificant speed-upUnsupervised learningSingle-cell datasetsMulti-omics dataCo-inertia analysisFeature dimensionsSpeed-upBioconductor packageSingle-cell analysisPartial least squaresLeast squaresRobust approachImplementationHTMLDatasetBioconductorA multi-omics systems vaccinology resource to develop and test computational models of immunity
Shinde P, Soldevila F, Reyna J, Aoki M, Rasmussen M, Willemsen L, Kojima M, Ha B, Greenbaum J, Overton J, Guzman-Orozco H, Nili S, Orfield S, Gygi J, da Silva Antunes R, Sette A, Grant B, Olsen L, Konstorum A, Guan L, Ay F, Kleinstein S, Peters B. A multi-omics systems vaccinology resource to develop and test computational models of immunity. Cell Reports Methods 2024, 4: 100731. PMID: 38490204, PMCID: PMC10985234, DOI: 10.1016/j.crmeth.2024.100731.Peer-Reviewed Original Research
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