2025
Recommendations for Standardizing Nuclear Medicine Terminology and Data in the Era of Theranostics and Artificial Intelligence
Bradshaw T, Brosch-Lenz J, Uribe C, Karakatsanis N, Bruce R, Strigari L, Jha A, Dutta J, Schwartz J, Fakhri G, Avval A, Rahmim A, Saboury B. Recommendations for Standardizing Nuclear Medicine Terminology and Data in the Era of Theranostics and Artificial Intelligence. Journal Of Nuclear Medicine 2025, 66: 1471-1479. PMID: 40639909, PMCID: PMC12410288, DOI: 10.2967/jnumed.124.269424.Peer-Reviewed Original ResearchConceptsArtificial intelligenceDevelopment of AI algorithmsEmergence of artificial intelligenceRadiopharmaceutical therapyMetadata frameworkAI algorithmsLarge datasetsTraining datasetBiomedical ontologiesData sharingStructured datasetsStandard vocabulariesDatasetEra of theranosticsData collectionPatient outcomesNuclear medicine data
2021
INNV-37. XCELSIOR: A REAL-TIME, REAL-WORLD LEARNING PLATFORM FOR PATIENTS WITH ADVANCED CANCER
Stuhlmiller T, Shapiro M, Wasserman A, Osking Z, Shrager J, Federowicz B, Warner M, Friedland J, Musella A, Blondin N, Fonkem E, Wong E, Kesari S. INNV-37. XCELSIOR: A REAL-TIME, REAL-WORLD LEARNING PLATFORM FOR PATIENTS WITH ADVANCED CANCER. Neuro-Oncology 2021, 23: vi113-vi113. DOI: 10.1093/neuonc/noab196.448.Peer-Reviewed Original ResearchData elementsIndividual data elementsClinical decision support algorithmDecision support algorithmData solutionsBiomedical ontologiesMedical documentsLearning platformSupport algorithmData entryVirtual tumor boardsPlatformAlgorithmOntologyCase studyInfrastructureNon-profit groupsBrain tumor researchDocumentsClinical researchersDatabaseAccessReal-world evidenceResearchProtocol
2018
How Sustainable are Biomedical Ontologies?
Geller J, Keloth V, Musen M. How Sustainable are Biomedical Ontologies? AMIA Annual Symposium Proceedings 2018, 2018: 470-479. PMID: 30815087, PMCID: PMC6371329.Peer-Reviewed Original ResearchExtended Analysis of Topological-Pattern-Based Ontology Enrichment
He Z, Keloth V, Chen Y, Geller J. Extended Analysis of Topological-Pattern-Based Ontology Enrichment. 2024 IEEE International Conference On Bioinformatics And Biomedicine (BIBM) 2018, 00: 1641-1648. PMID: 30854243, PMCID: PMC6402505, DOI: 10.1109/bibm.2018.8621564.Peer-Reviewed Original ResearchUnified Medical Language SystemTarget ontologyNational Cancer Institute ThesaurusMaintenance of biomedical ontologiesPairs of ontologiesMedical Language SystemHuman expertsCross-ontologyReference ontologyBiomedical ontologiesOntologyLanguage systemExpert resourcesHierarchical relationshipsTheoretical analysisApproximate locationTopological patternsThesaurusReference conceptTaskConceptClassificationMethodUnified
2017
Expressing Biomedical Ontologies in Natural Language for Expert Evaluation.
Amith M, Manion F, Harris M, Zhang Y, Xu H, Tao C. Expressing Biomedical Ontologies in Natural Language for Expert Evaluation. 2017, 245: 838-842. PMID: 29295217, PMCID: PMC6644701.Peer-Reviewed Original Research
2009
Automated Database Mediation Using Ontological Metadata Mappings
Marenco L, Wang R, Nadkarni P. Automated Database Mediation Using Ontological Metadata Mappings. Journal Of The American Medical Informatics Association 2009, 16: 723-737. PMID: 19567801, PMCID: PMC2744723, DOI: 10.1197/jamia.m3031.Peer-Reviewed Original ResearchConceptsCross-database queriesHigh-level rulesEnforcement of constraintsDatabase MediationDatabase federationsDatabase ontologyExtended metadataGranularity levelsMetadata mappingBiomedical ontologiesDifferent granularitiesFramework simplifiesCategories of dataMaintenance of systemsMapping rulesQueriesDatabase informationGranularity of representationGlobal vocabularyOntologyGranularityIntegrator systemMetadataDatabaseSNOMED
2006
The Practical Impact of Ontologies on Biomedical Informatics
Cimino J, Zhu X. The Practical Impact of Ontologies on Biomedical Informatics. Yearbook Of Medical Informatics 2006, 15: 124-135. PMID: 17051306, DOI: 10.1055/s-0038-1638470.Peer-Reviewed Original ResearchConceptsUnified Medical Language SystemMedical Entities DictionaryBiomedical information systemsFull-text searchProtégé toolEntities DictionaryBiomedical ontologiesTerm ontologyRecent research workInformation systemsBiomedical terminologiesBiomedical informaticsOntologySNOMED CTFoundational ModelNCI ThesaurusNDF-RTTerminology modelLanguage systemTerminology projectsDefinitional knowledgeResearch workPractical impactRecent orientation
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