2013
77 Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
Wang J, Zhuang J, Iyer S, Lin X, Whitfield T, Greven M, Pierce B, Dong X, Kundaje A, Cheng Y, Rando O, Birney E, Myers R, Noble W, Snyder M, Weng Z. 77 Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors. Journal Of Biomolecular Structure And Dynamics 2013, 31: 49-50. DOI: 10.1080/07391102.2013.786511.Peer-Reviewed Original ResearchChIP-seqTF bindingGC-richSecondary motifsTranscription factor (TFChIP-seq dataTF binding sitesDNase I-sensitive regionsHuman transcription factorsNucleosomes in vivoHigh-throughput sequencingDNase I digestionHistone deacetylase HDAC2Cell type-specificCell linesENCODE consortiumGenome-wideSequence motifsGenomic regionsCanonical motifsNucleosome-depletedChromatin structureMotif sitesTethered bindingSequence features
2012
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
Wang J, Zhuang J, Iyer S, Lin X, Whitfield T, Greven M, Pierce B, Dong X, Kundaje A, Cheng Y, Rando O, Birney E, Myers R, Noble W, Snyder M, Weng Z. Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors. Genome Research 2012, 22: 1798-1812. PMID: 22955990, PMCID: PMC3431495, DOI: 10.1101/gr.139105.112.Peer-Reviewed Original ResearchMeSH KeywordsBase CompositionBinding SitesCell LineChromatin Assembly and DisassemblyChromatin ImmunoprecipitationCluster AnalysisComputational BiologyDeoxyribonuclease IGenome, HumanHigh-Throughput Nucleotide SequencingHumansInternetMolecular Sequence AnnotationNucleosomesNucleotide MotifsOrgan SpecificityProtein BindingTranscription FactorsConceptsChIP-seqTF bindingGC-richSecondary motifsRegions genome-wideChIP-seq dataTF binding sitesDNase I-sensitive regionsHuman transcription factorsNucleosomes in vivoHigh-throughput sequencingDNase I digestionHistone deacetylase HDAC2Cell type-specificCell linesENCODE consortiumGenome-wideSequence motifsGenomic regionsNucleosome-depletedCanonical motifsChromatin structureMotif sitesTethered bindingSequence features
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