2025
A comparative analysis of privacy-preserving large language models for automated echocardiography report analysis
Mahmoudi E, Vahdati S, Chao C, Khosravi B, Misra A, Lopez-Jimenez F, Erickson B. A comparative analysis of privacy-preserving large language models for automated echocardiography report analysis. Journal Of The American Medical Informatics Association 2025, 32: 1120-1129. PMID: 40334045, PMCID: PMC12257941, DOI: 10.1093/jamia/ocaf056.Peer-Reviewed Original ResearchConceptsMean square errorLanguage modelLarge modelsHigher accuracyAutomated data extractionClassification metricsNear-perfect performanceGround truthValvular heart diseaseVHD severityIrrelevant informationComputational efficiencyIncreasing processing timeProcessing timeCOTSSmall modelsAccuracyHigh performancePerformanceConsecutive transthoracic echocardiographiesOptimizationRandom reportsTransthoracic echocardiographyRegistry formatMetrics
2024
BioCoder: a benchmark for bioinformatics code generation with large language models
Tang X, Qian B, Gao R, Chen J, Chen X, Gerstein M. BioCoder: a benchmark for bioinformatics code generation with large language models. Bioinformatics 2024, 40: i266-i276. PMID: 38940140, PMCID: PMC11211839, DOI: 10.1093/bioinformatics/btae230.Peer-Reviewed Original ResearchConceptsCode generationLanguage modelAmount of domain knowledgeDomain-specific knowledgeJava methodsDomain knowledgeClass declarationsPerformance gainsData operationsPython functionsTraining datasetSuccess modelIntricate taskTest benchmarksDocker imageBenchmarksCodeSmall modelsDatasetGlobal variablesBioCodeFunctional dependenceEvaluate various modelsIncreasing needCodeGen
1998
Building manageable rough set classifiers.
Ohrn A, Ohno-Machado L, Rowland T. Building manageable rough set classifiers. AMIA Annual Symposium Proceedings 1998, 543-7. PMID: 9929278, PMCID: PMC2232320.Peer-Reviewed Original ResearchConceptsReal-world medical datasetsRule-based classifierRough set classifierRough set theoryKnowledge discoveryData miningMedical datasetsBoolean reasoningSet classifierSet theoryClassifierBetter performanceSmall modelsMiningAvailable informationDatasetReasoningInteresting aspectsModelCapabilityInformationSetInspectionRulesPerformance
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