Publications

2023

Making inroads to precision medicine for the treatment of autoimmune diseases: Harnessing genomic studies to better diagnose and treat complex disorders.Baglaenko Y, Wagner C, Bhoj VG, Brodin P, Gershwin ME, Graham D, Invernizzi P, Kidd KK, Korsunsky I, Levy M, Mammen AL, Nizet V, Ramirez-Valle F, Stites EC, Williams MS, Wilson M, Rose NR, Ladd V, Sirota M. Camb Prism Precis Med. 2023; 2023 May 11. PMID: 38550937.

2022

Metabolic diversity in human populations and correlation with genetic and ancestral geographic distances.Peng G, Pakstis AJ, Gandotra N, Cowan TM, Zhao H, Kidd KK, Scharfe C. Mol Genet Metab. 2022 Nov; 2022 Oct 13. PMID: 36252453.
A multipurpose panel of microhaplotypes for use with STR markers in casework.Kidd KK, Pakstis AJ, Gandotra N, Scharfe C, Podini D. Forensic Sci Int Genet. 2022 Sep; 2022 Jun 3. PMID: 35696960.
State of the Art for Microhaplotypes.Kidd KK, Pakstis AJ. Genes (Basel). 2022 Jul 24; 2022 Jul 24. PMID: 35893059.
North Asian population relationships in a global context.Kidd KK, Evsanaa B, Togtokh A, Brissenden JE, Roscoe JM, Dogan M, Neophytou PI, Gurkan C, Bulbul O, Cherni L, Speed WC, Murtha M, Kidd JR, Pakstis AJ. Sci Rep. 2022 May 4; 2022 May 4. PMID: 35508562.
New Insight into the human genetic diversity in North African populations by genotyping of SNPs in DRD3, CSMD1 and NRG1 genes.Mestiri S, Boussetta S, Pakstis AJ, El Kamel S, Ben Ammar El Gaaied A, Kidd KK, Cherni L. Mol Genet Genomic Med. 2022 Mar; 2022 Feb 7. PMID: 35128830.

2021

The population genetics characteristics of a 90 locus panel of microhaplotypes.Pakstis AJ, Gandotra N, Speed WC, Murtha M, Scharfe C, Kidd KK. Hum Genet. 2021 Dec; 2021 Oct 13. PMID: 34643790.
STAT3 polymorphisms in North Africa and its implication in breast cancer.Ziadi W, Boussetta S, Elkamel S, Pakstis AJ, Kidd KK, Medimegh I, Ben Ammar Elgaaied A, Cherni L. Mol Genet Genomic Med. 2021 Aug; 2021 Jul 12. PMID: 34251094.
A Distinctive Pattern of Diversity for the TAS2R38 Gene in North Africa.Mourali-Chebil S, Elkamel S, Boussetta S, Pakstis AJ, Kidd KK, Benammar-Elgaaied A, Cherni L. Hum Biol. 2021 Summer. PMID: 37733614.
Genetic relationships of Southwest Asian and Mediterranean populations.Kidd KK, Bulbul O, Gurkan C, Dogan M, Dogan S, Neophytou PI, Cherni L, Gurwitz D, Speed WC, Murtha M, Kidd JR, Pakstis AJ. Forensic Sci Int Genet. 2021 Jul; 2021 May 14. PMID: 34020230.
Editorial: Current and Emerging Trends in Human Identification and Molecular Anthropology.Gurkan C, Bulbul O, Kidd KK. Front Genet. 2021; 2021 Jun 23. PMID: 34249111.
Genetic diversity of the North African population revealed by the typing of SNPs in the DRD2/ANKK1 genomic region.Mestiri S, Boussetta S, Pakstis AJ, Elkamel S, Elgaaied ABA, Kidd KK, Cherni L. Gene. 2021 Apr 20; 2021 Jan 29. PMID: 33524518.

2020

Population genetic data of 74 microhaplotypes in four major U.S. population groups.Oldoni F, Yoon L, Wootton SC, Lagacé R, Kidd KK, Podini D. Forensic Sci Int Genet. 2020 Nov; 2020 Oct 3. PMID: 33045522.
A sequence-based 74plex microhaplotype assay for analysis of forensic DNA mixtures.Oldoni F, Bader D, Fantinato C, Wootton SC, Lagacé R, Kidd KK, Podini D. Forensic Sci Int Genet. 2020 Nov; 2020 Aug 11. PMID: 32919300.
The distinctive geographic patterns of common pigmentation variants at the OCA2 gene.Kidd KK, Pakstis AJ, Donnelly MP, Bulbul O, Cherni L, Gurkan C, Kang L, Li H, Yun L, Paschou P, Meiklejohn KA, Haigh E, Speed WC. Sci Rep. 2020 Sep 22; 2020 Sep 22. PMID: 32963319.
Validation of novel forensic DNA markers using multiplex microhaplotype sequencing.Gandotra N, Speed WC, Qin W, Tang Y, Pakstis AJ, Kidd KK, Scharfe C. Forensic Sci Int Genet. 2020 Jul; 2020 Mar 18. PMID: 32305739.
FrogAncestryCalc: A standalone batch likelihood computation tool for ancestry inference panels catalogued in FROG-kb.Rajeevan H, Soundararajan U, Pakstis AJ, Kidd KK. Forensic Sci Int Genet. 2020 May; 2020 Jan 22. PMID: 31991337.

2019

Population relationships based on 170 ancestry SNPs from the combined Kidd and Seldin panels.Pakstis AJ, Speed WC, Soundararajan U, Rajeevan H, Kidd JR, Li H, Kidd KK. Sci Rep. 2019 Dec 11; 2019 Dec 11. PMID: 31827153.
Genetic relationships of European, Mediterranean, and SW Asian populations using a panel of 55 AISNPs.Pakstis AJ, Gurkan C, Dogan M, Balkaya HE, Dogan S, Neophytou PI, Cherni L, Boussetta S, Khodjet-El-Khil H, Ben Ammar ElGaaied A, Salvo NM, Janssen K, Olsen GH, Hadi S, Almohammed EK, Pereira V, Truelsen DM, Bulbul O, Soundararajan U, Rajeevan H, Kidd JR, Kidd KK. Eur J Hum Genet. 2019 Dec; 2019 Jul 8. PMID: 31285530.
Genetic history of the population of Crete.Drineas P, Tsetsos F, Plantinga A, Lazaridis I, Yannaki E, Razou A, Kanaki K, Michalodimitrakis M, Perez-Jimenez F, De Silvestro G, Renda MC, Stamatoyannopoulos JA, Kidd KK, Browning BL, Paschou P, Stamatoyannopoulos G. Ann Hum Genet. 2019 Nov; 2019 Jun 13. PMID: 31192450.
MAPlex - A massively parallel sequencing ancestry analysis multiplex for Asia-Pacific populations.Phillips C, McNevin D, Kidd KK, Lagacé R, Wootton S, de la Puente M, Freire-Aradas A, Mosquera-Miguel A, Eduardoff M, Gross T, Dagostino L, Power D, Olson S, Hashiyada M, Oz C, Parson W, Schneider PM, Lareu MV, Daniel R. Forensic Sci Int Genet. 2019 Sep; 2019 Jun 28. PMID: 31377479.
Usefulness of COMT gene polymorphisms in North African populations.Boussetta S, Cherni L, Pakstis AJ, Ben Salem N, Elkamel S, Khodjet-El-Khil H, Kidd KK, Elgaaied ABA. Gene. 2019 May 15; 2019 Feb 18. PMID: 30790653.
Correction to: Mixture deconvolution by massively parallel sequencing of microhaplotypes.Bennett L, Oldoni F, Long K, Cisana S, Maddela K, Wootton S, Chang J, Hasegawa R, Lagacé R, Kidd KK, Podini D. Int J Legal Med. 2019 May. PMID: 30834970.
Mixture deconvolution by massively parallel sequencing of microhaplotypes.Bennett L, Oldoni F, Long K, Cisana S, Madella K, Wootton S, Chang J, Hasegawa R, Lagacé R, Kidd KK, Podini D. Int J Legal Med. 2019 May; 2019 Feb 13. PMID: 30758713.
Microhaplotypes in forensic genetics.Oldoni F, Kidd KK, Podini D. Forensic Sci Int Genet. 2019 Jan; 2018 Oct 1. PMID: 30347322.

2018

Selecting microhaplotypes optimized for different purposes.Kidd KK, Pakstis AJ, Speed WC, Lagace R, Wootton S, Chang J. Electrophoresis. 2018 Nov; 2018 Jul 10. PMID: 29931757.
Recent Selection on a Class I ADH Locus Distinguishes Southwest Asian Populations Including Ashkenazi Jews.Gu S, Li H, Pakstis AJ, Speed WC, Gurwitz D, Kidd JR, Kidd KK. Genes (Basel). 2018 Sep 7; 2018 Sep 7. PMID: 30205534.
Improving ancestry distinctions among Southwest Asian populations.Bulbul O, Speed WC, Gurkan C, Soundararajan U, Rajeevan H, Pakstis AJ, Kidd KK. Forensic Sci Int Genet. 2018 Jul; 2018 Mar 23. PMID: 29625264.
Ancestry inference of 96 population samples using microhaplotypes.Bulbul O, Pakstis AJ, Soundararajan U, Gurkan C, Brissenden JE, Roscoe JM, Evsanaa B, Togtokh A, Paschou P, Grigorenko EL, Gurwitz D, Wootton S, Lagace R, Chang J, Speed WC, Kidd KK. Int J Legal Med. 2018 May; 2017 Dec 16. PMID: 29248957.
The redesigned Forensic Research/Reference on Genetics-knowledge base, FROG-kb.Kidd KK, Soundararajan U, Rajeevan H, Pakstis AJ, Moore KN, Ropero-Miller JD. Forensic Sci Int Genet. 2018 Mar; 2017 Nov 14. PMID: 29175726.

2017

Evaluating 130 microhaplotypes across a global set of 83 populations.Kidd KK, Speed WC, Pakstis AJ, Podini DS, Lagacé R, Chang J, Wootton S, Haigh E, Soundararajan U. Forensic Sci Int Genet. 2017 Jul; 2017 Mar 16. PMID: 28359046.
Increasing the reference populations for the 55 AISNP panel: the need and benefits.Pakstis AJ, Kang L, Liu L, Zhang Z, Jin T, Grigorenko EL, Wendt FR, Budowle B, Hadi S, Al Qahtani MS, Morling N, Mogensen HS, Themudo GE, Soundararajan U, Rajeevan H, Kidd JR, Kidd KK. Int J Legal Med. 2017 Jul; 2017 Jan 9. PMID: 28070634.
Genetics of the peloponnesean populations and the theory of extinction of the medieval peloponnesean Greeks.Stamatoyannopoulos G, Bose A, Teodosiadis A, Tsetsos F, Plantinga A, Psatha N, Zogas N, Yannaki E, Zalloua P, Kidd KK, Browning BL, Stamatoyannopoulos J, Paschou P, Drineas P. Eur J Hum Genet. 2017 May; 2017 Mar 8. PMID: 28272534.
Confounding effects of microbiome on the susceptibility of TNFSF15 to Crohn's disease in the Ryukyu Islands.Nakagome S, Chinen H, Iraha A, Hokama A, Takeyama Y, Sakisaka S, Matsui T, Kidd JR, Kidd KK, Said HS, Suda W, Morita H, Hattori M, Hanihara T, Kimura R, Ishida H, Fujita J, Kinjo F, Mano S, Oota H. Hum Genet. 2017 Apr; 2017 Feb 14. PMID: 28197769.

2016

Genetic variation in Tunisia in the context of human diversity worldwide.Cherni L, Pakstis AJ, Boussetta S, Elkamel S, Frigi S, Khodjet-El-Khil H, Barton A, Haigh E, Speed WC, Ben Ammar Elgaaied A, Kidd JR, Kidd KK. Am J Phys Anthropol. 2016 Sep; 2016 May 18. PMID: 27192181.
Evaluating a subset of ancestry informative SNPs for discriminating among Southwest Asian and circum-Mediterranean populations.Bulbul O, Cherni L, Khodjet-El-Khil H, Rajeevan H, Kidd KK. Forensic Sci Int Genet. 2016 Jul; 2016 Apr 27. PMID: 27160361.
A panel of 74 AISNPs: Improved ancestry inference within Eastern Asia.Li CX, Pakstis AJ, Jiang L, Wei YL, Sun QF, Wu H, Bulbul O, Wang P, Kang LL, Kidd JR, Kidd KK. Forensic Sci Int Genet. 2016 Jul; 2016 Apr 4. PMID: 27077960.
Minimal SNP overlap among multiple panels of ancestry informative markers argues for more international collaboration.Soundararajan U, Yun L, Shi M, Kidd KK. Forensic Sci Int Genet. 2016 Jul; 2016 Jan 22. PMID: 26977931.
Proposed nomenclature for microhaplotypes.Kidd KK. Hum Genomics. 2016 Jun 17; 2016 Jun 17. PMID: 27316555.
Vibratory Urticaria Associated with a Missense Variant in ADGRE2.Boyden SE, Desai A, Cruse G, Young ML, Bolan HC, Scott LM, Eisch AR, Long RD, Lee CC, Satorius CL, Pakstis AJ, Olivera A, Mullikin JC, Chouery E, Mégarbané A, Medlej-Hashim M, Kidd KK, Kastner DL, Metcalfe DD, Komarow HD. N Engl J Med. 2016 Feb 18; 2016 Feb 3. PMID: 26841242.

2015

52 additional reference population samples for the 55 AISNP panel.Pakstis AJ, Haigh E, Cherni L, ElGaaied ABA, Barton A, Evsanaa B, Togtokh A, Brissenden J, Roscoe J, Bulbul O, Filoglu G, Gurkan C, Meiklejohn KA, Robertson JM, Li CX, Wei YL, Li H, Soundararajan U, Rajeevan H, Kidd JR, Kidd KK. Forensic Sci Int Genet. 2015 Nov; 2015 Aug 14. PMID: 26355664.
Mongolians in the Genetic Landscape of Central Asia: Exploring the Genetic Relations among Mongolians and Other World Populations.Brissenden JE, Kidd JR, Evsanaa B, Togtokh AJ, Pakstis AJ, Friedlaender F, Kidd KK, Roscoe JM. Hum Biol. 2015 Apr. PMID: 26829292.
Inferring population structure and demographic history using Y-STR data from worldwide populations.Xu H, Wang CC, Shrestha R, Wang LX, Zhang M, He Y, Kidd JR, Kidd KK, Jin L, Li H. Mol Genet Genomics. 2015 Feb; 2014 Aug 27. PMID: 25159112.
Criteria for selecting microhaplotypes: mixture detection and deconvolution.Kidd KK, Speed WC. Investig Genet. 2015; 2015 Jan 28. PMID: 25750707.

2014

Current sequencing technology makes microhaplotypes a powerful new type of genetic marker for forensics.Kidd KK, Pakstis AJ, Speed WC, Lagacé R, Chang J, Wootton S, Haigh E, Kidd JR. Forensic Sci Int Genet. 2014 Sep; 2014 Jul 1. PMID: 25038325.
Maritime route of colonization of Europe.Paschou P, Drineas P, Yannaki E, Razou A, Kanaki K, Tsetsos F, Padmanabhuni SS, Michalodimitrakis M, Renda MC, Pavlovic S, Anagnostopoulos A, Stamatoyannopoulos JA, Kidd KK, Stamatoyannopoulos G. Proc Natl Acad Sci U S A. 2014 Jun 24; 2014 Jun 9. PMID: 24927591.
A form of the metabolic syndrome associated with mutations in DYRK1B.Keramati AR, Fathzadeh M, Go GW, Singh R, Choi M, Faramarzi S, Mane S, Kasaei M, Sarajzadeh-Fard K, Hwa J, Kidd KK, Babaee Bigi MA, Malekzadeh R, Hosseinian A, Babaei M, Lifton RP, Mani A. N Engl J Med. 2014 May 15. PMID: 24827035.
Progress toward an efficient panel of SNPs for ancestry inference.Kidd KK, Speed WC, Pakstis AJ, Furtado MR, Fang R, Madbouly A, Maiers M, Middha M, Friedlaender FR, Kidd JR. Forensic Sci Int Genet. 2014 May; 2014 Jan 15. PMID: 24508742.
Application of six IrisPlex SNPs and comparison of two eye color prediction systems in diverse Eurasia populations.Yun L, Gu Y, Rajeevan H, Kidd KK. Int J Legal Med. 2014 May; 2014 Jan 7. PMID: 24395150.
An historical perspective on "The world-wide distribution of allele frequencies at the human dopamine D4 receptor locus".Kidd KK, Pakstis AJ, Yun L. Hum Genet. 2014 Apr; 2013 Oct 27. PMID: 24162668.
Haplotype structure and positive selection at TLR1.Heffelfinger C, Pakstis AJ, Speed WC, Clark AP, Haigh E, Fang R, Furtado MR, Kidd KK, Snyder MP. Eur J Hum Genet. 2014 Apr; 2013 Sep 4. PMID: 24002163.
Extensive sequence variation in the 3' untranslated region of the KRAS gene in lung and ovarian cancer cases.Kim M, Chen X, Chin LJ, Paranjape T, Speed WC, Kidd KK, Zhao H, Weidhaas JB, Slack FJ. Cell Cycle. 2014; 2014 Feb 3. PMID: 24552817.

2013

Worldwide population variation and haplotype analysis at the serotonin transporter gene SLC6A4 and implications for association studies.Murdoch JD, Speed WC, Pakstis AJ, Heffelfinger CE, Kidd KK. Biol Psychiatry. 2013 Dec 15; 2013 Mar 16. PMID: 23510579.
Inference of human continental origin and admixture proportions using a highly discriminative ancestry informative 41-SNP panel.Nievergelt CM, Maihofer AX, Shekhtman T, Libiger O, Wang X, Kidd KK, Kidd JR. Investig Genet. 2013 Jul 1; 2013 Jul 1. PMID: 23815888.
Genome-wide association study of Tourette's syndrome.Scharf JM, Yu D, Mathews CA, Neale BM, Stewart SE, Fagerness JA, Evans P, Gamazon E, Edlund CK, Service SK, Tikhomirov A, Osiecki L, Illmann C, Pluzhnikov A, Konkashbaev A, Davis LK, Han B, Crane J, Moorjani P, Crenshaw AT, Parkin MA, Reus VI, Lowe TL, Rangel-Lugo M, Chouinard S, Dion Y, Girard S, Cath DC, Smit JH, King RA, Fernandez TV, Leckman JF, Kidd KK, Kidd JR, Pakstis AJ, State MW, Herrera LD, Romero R, Fournier E, Sandor P, Barr CL, Phan N, Gross-Tsur V, Benarroch F, Pollak Y, Budman CL, Bruun RD, Erenberg G, Naarden AL, Lee PC, Weiss N, Kremeyer B, Berrío GB, Campbell DD, Cardona Silgado JC, Ochoa WC, Mesa Restrepo SC, Muller H, Valencia Duarte AV, Lyon GJ, Leppert M, Morgan J, Weiss R, Grados MA, Anderson K, Davarya S, Singer H, Walkup J, Jankovic J, Tischfield JA, Heiman GA, Gilbert DL, Hoekstra PJ, Robertson MM, Kurlan R, Liu C, Gibbs JR, Singleton A, Hardy J, Strengman E, Ophoff RA, Wagner M, Moessner R, Mirel DB, Posthuma D, Sabatti C, Eskin E, Conti DV, Knowles JA, Ruiz-Linares A, Rouleau GA, Purcell S, Heutink P, Oostra BA, McMahon WM, Freimer NB, Cox NJ, Pauls DL. Mol Psychiatry. 2013 Jun; 2012 Aug 14. PMID: 22889924.

2012

High diversity and no significant selection signal of human ADH1B gene in Tibet.Lu Y, Kang L, Hu K, Wang C, Sun X, Chen F, Kidd JR, Kidd KK, Li H. Investig Genet. 2012 Nov 23; 2012 Nov 23. PMID: 23176670.
Exploring genomic structure differences and similarities between the Greek and European HapMap populations: implications for association studies.Stathias V, Sotiris GR, Karagiannidis I, Bourikas G, Martinis G, Papazoglou D, Tavridou A, Papanas N, Maltezos E, Theodoridis M, Vargemezis V, Manolopoulos VG, Speed WC, Kidd JR, Kidd KK, Drineas P, Paschou P. Ann Hum Genet. 2012 Nov. PMID: 23061745.
Mini-haplotypes as lineage informative SNPs and ancestry inference SNPs.Pakstis AJ, Fang R, Furtado MR, Kidd JR, Kidd KK. Eur J Hum Genet. 2012 Nov; 2012 Apr 25. PMID: 22535184.
Introducing the Forensic Research/Reference on Genetics knowledge base, FROG-kb.Rajeevan H, Soundararajan U, Pakstis AJ, Kidd KK. Investig Genet. 2012 Sep 1; 2012 Sep 1. PMID: 22938150.
Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma.Krauthammer M, Kong Y, Ha BH, Evans P, Bacchiocchi A, McCusker JP, Cheng E, Davis MJ, Goh G, Choi M, Ariyan S, Narayan D, Dutton-Regester K, Capatana A, Holman EC, Bosenberg M, Sznol M, Kluger HM, Brash DE, Stern DF, Materin MA, Lo RS, Mane S, Ma S, Kidd KK, Hayward NK, Lifton RP, Schlessinger J, Boggon TJ, Halaban R. Nat Genet. 2012 Sep; 2012 Jul 29. PMID: 22842228.
Expanding data and resources for forensic use of SNPs in individual identification.Kidd KK, Kidd JR, Speed WC, Fang R, Furtado MR, Hyland FC, Pakstis AJ. Forensic Sci Int Genet. 2012 Sep; 2012 Mar 22. PMID: 22445421.
Structural diversity and African origin of the 17q21.31 inversion polymorphism.Steinberg KM, Antonacci F, Sudmant PH, Kidd JM, Campbell CD, Vives L, Malig M, Scheinfeldt L, Beggs W, Ibrahim M, Lema G, Nyambo TB, Omar SA, Bodo JM, Froment A, Donnelly MP, Kidd KK, Tishkoff SA, Eichler EE. Nat Genet. 2012 Jul 1; 2012 Jul 1. PMID: 22751100.
Crohn's disease risk alleles on the NOD2 locus have been maintained by natural selection on standing variation.Nakagome S, Mano S, Kozlowski L, Bujnicki JM, Shibata H, Fukumaki Y, Kidd JR, Kidd KK, Kawamura S, Oota H. Mol Biol Evol. 2012 Jun; 2012 Jan 12. PMID: 22319155.
A global view of the OCA2-HERC2 region and pigmentation.Donnelly MP, Paschou P, Grigorenko E, Gurwitz D, Barta C, Lu RB, Zhukova OV, Kim JJ, Siniscalco M, New M, Li H, Kajuna SL, Manolopoulos VG, Speed WC, Pakstis AJ, Kidd JR, Kidd KK. Hum Genet. 2012 May; 2011 Nov 8. PMID: 22065085.
ALFRED: an allele frequency resource for research and teaching.Rajeevan H, Soundararajan U, Kidd JR, Pakstis AJ, Kidd KK. Nucleic Acids Res. 2012 Jan; 2011 Oct 28. PMID: 22039151.

2011

Single nucleotide polymorphisms and haplotypes in Native American populations.Kidd JR, Friedlaender F, Pakstis AJ, Furtado M, Fang R, Wang X, Nievergelt CM, Kidd KK. Am J Phys Anthropol. 2011 Dec; 2011 Sep 13. PMID: 21913176.
Selecting SNPs to identify ancestry.Sampson JN, Kidd KK, Kidd JR, Zhao H. Ann Hum Genet. 2011 Jul. PMID: 21668909.
Diversification of the ADH1B gene during expansion of modern humans.Li H, Gu S, Han Y, Xu Z, Pakstis AJ, Jin L, Kidd JR, Kidd KK. Ann Hum Genet. 2011 Jul; 2011 May 18. PMID: 21592108.
Selection on the human bitter taste gene, TAS2R16, in Eurasian populations.Li H, Pakstis AJ, Kidd JR, Kidd KK. Hum Biol. 2011 Jun. PMID: 21740153.
A Variant in a MicroRNA complementary site in the 3' UTR of the KIT oncogene increases risk of acral melanoma.Godshalk SE, Paranjape T, Nallur S, Speed W, Chan E, Molinaro AM, Bacchiocchi A, Hoyt K, Tworkoski K, Stern DF, Sznol M, Ariyan S, Lazova R, Halaban R, Kidd KK, Weidhaas JB, Slack FJ. Oncogene. 2011 Mar 31; 2010 Nov 29. PMID: 21119596.
Hunter-gatherer genomic diversity suggests a southern African origin for modern humans.Henn BM, Gignoux CR, Jobin M, Granka JM, Macpherson JM, Kidd JM, Rodríguez-Botigué L, Ramachandran S, Hon L, Brisbin A, Lin AA, Underhill PA, Comas D, Kidd KK, Norman PJ, Parham P, Bustamante CD, Mountain JL, Feldman MW. Proc Natl Acad Sci U S A. 2011 Mar 29; 2011 Mar 7. PMID: 21383195.
Analyses of a set of 128 ancestry informative single-nucleotide polymorphisms in a global set of 119 population samples.Kidd JR, Friedlaender FR, Speed WC, Pakstis AJ, De La Vega FM, Kidd KK. Investig Genet. 2011 Jan 5; 2011 Jan 5. PMID: 21208434.
An application of the elastic net for an endophenotype analysis.Palejev D, Hwang W, Landi N, Eastman M, Frost SJ, Fulbright RK, Kidd JR, Kidd KK, Mason GF, Mencl WE, Yrigollen C, Pugh KR, Grigorenko EL. Behav Genet. 2011 Jan; 2011 Jan 13. PMID: 21229297.
Rare BRCA1 haplotypes including 3'UTR SNPs associated with breast cancer risk.Pelletier C, Speed WC, Paranjape T, Keane K, Blitzblau R, Hollestelle A, Safavi K, van den Ouweland A, Zelterman D, Slack FJ, Kidd KK, Weidhaas JB. Cell Cycle. 2011 Jan 1; 2011 Jan 1. PMID: 21191178.

2010

Vegetable Intake in College-Aged Adults Is Explained by Oral Sensory Phenotypes and TAS2R38 Genotype.Duffy VB, Hayes JE, Davidson AC, Kidd JR, Kidd KK, Bartoshuk LM. Chemosens Percept. 2010 Dec 1. PMID: 21157576.
Additional support for the association of SLITRK1 var321 and Tourette syndrome.O'Roak BJ, Morgan TM, Fishman DO, Saus E, Alonso P, Gratacòs M, Estivill X, Teltsh O, Kohn Y, Kidd KK, Cho J, Lifton RP, State MW. Mol Psychiatry. 2010 May; 2010 Mar 30. PMID: 20351724.
A variant of the endothelial nitric oxide synthase gene (NOS3) associated with AMS susceptibility is less common in the Quechua, a high altitude Native population.Wang P, Ha AY, Kidd KK, Koehle MS, Rupert JL. High Alt Med Biol. 2010 Spring. PMID: 20367485.
SNPs for a universal individual identification panel.Pakstis AJ, Speed WC, Fang R, Hyland FC, Furtado MR, Kidd JR, Kidd KK. Hum Genet. 2010 Mar. PMID: 19937056.
The distribution and most recent common ancestor of the 17q21 inversion in humans.Donnelly MP, Paschou P, Grigorenko E, Gurwitz D, Mehdi SQ, Kajuna SL, Barta C, Kungulilo S, Karoma NJ, Lu RB, Zhukova OV, Kim JJ, Comas D, Siniscalco M, New M, Li P, Li H, Manolopoulos VG, Speed WC, Rajeevan H, Pakstis AJ, Kidd JR, Kidd KK. Am J Hum Genet. 2010 Feb 12; 2010 Jan 28. PMID: 20116045.
The complex global pattern of genetic variation and linkage disequilibrium at catechol-O-methyltransferase.Mukherjee N, Kidd KK, Pakstis AJ, Speed WC, Li H, Tarnok Z, Barta C, Kajuna SL, Kidd JR. Mol Psychiatry. 2010 Feb; 2008 Jun 24. PMID: 18574484.
Using a pharmacokinetic model to relate an individual's susceptibility to alcohol dependence to genotypes.Mustavich LF, Miller P, Kidd KK, Zhao H. Hum Hered. 2010; 2010 Aug 12. PMID: 20714161.

2009

Genetic landscape of Eurasia and "admixture" in Uyghurs.Li H, Cho K, Kidd JR, Kidd KK. Am J Hum Genet. 2009 Dec. PMID: 20004770.
Global variation in CYP2C8-CYP2C9 functional haplotypes.Speed WC, Kang SP, Tuck DP, Harris LN, Kidd KK. Pharmacogenomics J. 2009 Aug; 2009 Apr 21. PMID: 19381162.
Evolutionary dynamics of human Toll-like receptors and their different contributions to host defense.Barreiro LB, Ben-Ali M, Quach H, Laval G, Patin E, Pickrell JK, Bouchier C, Tichit M, Neyrolles O, Gicquel B, Kidd JR, Kidd KK, Alcaïs A, Ragimbeau J, Pellegrini S, Abel L, Casanova JL, Quintana-Murci L. PLoS Genet. 2009 Jul; 2009 Jul 17. PMID: 19609346.
Refined geographic distribution of the oriental ALDH2*504Lys (nee 487Lys) variant.Li H, Borinskaya S, Yoshimura K, Kal'ina N, Marusin A, Stepanov VA, Qin Z, Khaliq S, Lee MY, Yang Y, Mohyuddin A, Gurwitz D, Mehdi SQ, Rogaev E, Jin L, Yankovsky NK, Kidd JR, Kidd KK. Ann Hum Genet. 2009 May. PMID: 19456322.
Population-specific variation in haplotype composition and heterozygosity at the POLB locus.Yamtich J, Speed WC, Straka E, Kidd JR, Sweasy JB, Kidd KK. DNA Repair (Amst). 2009 May 1; 2009 Jan 23. PMID: 19167932.
Origin and dispersal of atypical aldehyde dehydrogenase ALDH2487Lys.Luo HR, Wu GS, Pakstis AJ, Tong L, Oota H, Kidd KK, Zhang YP. Gene. 2009 Apr 15; 2009 Jan 29. PMID: 19393179.
Inferring the demographic history of African farmers and pygmy hunter-gatherers using a multilocus resequencing data set.Patin E, Laval G, Barreiro LB, Salas A, Semino O, Santachiara-Benerecetti S, Kidd KK, Kidd JR, Van der Veen L, Hombert JM, Gessain A, Froment A, Bahuchet S, Heyer E, Quintana-Murci L. PLoS Genet. 2009 Apr; 2009 Apr 10. PMID: 19360089.
Signatures of purifying and local positive selection in human miRNAs.Quach H, Barreiro LB, Laval G, Zidane N, Patin E, Kidd KK, Kidd JR, Bouchier C, Veuille M, Antoniewski C, Quintana-Murci L. Am J Hum Genet. 2009 Mar; 2009 Feb 19. PMID: 19232555.
Semantic Web-based integration of cancer pathways and allele frequency data.Holford ME, Rajeevan H, Zhao H, Kidd KK, Cheung KH. Cancer Inform. 2009 Jan 15; 2009 Jan 15. PMID: 19458791.

2008

A SNP in a let-7 microRNA complementary site in the KRAS 3' untranslated region increases non-small cell lung cancer risk.Chin LJ, Ratner E, Leng S, Zhai R, Nallur S, Babar I, Muller RU, Straka E, Su L, Burki EA, Crowell RE, Patel R, Kulkarni T, Homer R, Zelterman D, Kidd KK, Zhu Y, Christiani DC, Belinsky SA, Slack FJ, Weidhaas JB. Cancer Res. 2008 Oct 15. PMID: 18922928.
Global patterns of variation in allele and haplotype frequencies and linkage disequilibrium across the CYP2E1 gene.Lee MY, Mukherjee N, Pakstis AJ, Khaliq S, Mohyuddin A, Mehdi SQ, Speed WC, Kidd JR, Kidd KK. Pharmacogenomics J. 2008 Oct; 2008 Jul 29. PMID: 18663376.
Genetic differences in human circadian clock genes among worldwide populations.Ciarleglio CM, Ryckman KK, Servick SV, Hida A, Robbins S, Wells N, Hicks J, Larson SA, Wiedermann JP, Carver K, Hamilton N, Kidd KK, Kidd JR, Smith JR, Friedlaender J, McMahon DG, Williams SM, Summar ML, Johnson CH. J Biol Rhythms. 2008 Aug. PMID: 18663240.
Haplotype evolution of SLITRK1, a candidate gene for Gilles de la Tourette syndrome.Speed WC, O'Roak BJ, Tárnok Z, Barta C, Pakstis AJ, State MW, Kidd KK. Am J Med Genet B Neuropsychiatr Genet. 2008 Jun 5. PMID: 18004766.
Ethnic related selection for an ADH Class I variant within East Asia.Li H, Gu S, Cai X, Speed WC, Pakstis AJ, Golub EI, Kidd JR, Kidd KK. PLoS One. 2008 Apr 2; 2008 Apr 2. PMID: 18382665.
Motoneuron-specific NR3B gene: no association with ALS and evidence for a common null allele.Niemann S, Landers JE, Churchill MJ, Hosler B, Sapp P, Speed WC, Lahn BT, Kidd KK, Brown RH Jr, Hayashi Y. Neurology. 2008 Feb 26; 2007 Aug 8. PMID: 17687115.
Maternal traces of deep common ancestry and asymmetric gene flow between Pygmy hunter-gatherers and Bantu-speaking farmers.Quintana-Murci L, Quach H, Harmant C, Luca F, Massonnet B, Patin E, Sica L, Mouguiama-Daouda P, Comas D, Tzur S, Balanovsky O, Kidd KK, Kidd JR, van der Veen L, Hombert JM, Gessain A, Verdu P, Froment A, Bahuchet S, Heyer E, Dausset J, Salas A, Behar DM. Proc Natl Acad Sci U S A. 2008 Feb 5; 2008 Jan 23. PMID: 18216239.
The genetic structure of Pacific Islanders.Friedlaender JS, Friedlaender FR, Reed FA, Kidd KK, Kidd JR, Chambers GK, Lea RA, Loo JH, Koki G, Hodgson JA, Merriwether DA, Weber JL. PLoS Genet. 2008 Jan. PMID: 18208337.
Multiple superoxide dismutase 1/splicing factor serine alanine 15 variants are associated with the development and progression of diabetic nephropathy: the Diabetes Control and Complications Trial/Epidemiology of Diabetes Interventions and Complications Genetics study.Al-Kateb H, Boright AP, Mirea L, Xie X, Sutradhar R, Mowjoodi A, Bharaj B, Liu M, Bucksa JM, Arends VL, Steffes MW, Cleary PA, Sun W, Lachin JM, Thorner PS, Ho M, McKnight AJ, Maxwell AP, Savage DA, Kidd KK, Kidd JR, Speed WC, Orchard TJ, Miller RG, Sun L, Bull SB, Paterson AD. Diabetes. 2008 Jan; 2007 Oct 3. PMID: 17914031.

2007

Geographically separate increases in the frequency of the derived ADH1B*47His allele in eastern and western Asia.Li H, Mukherjee N, Soundararajan U, Tarnok Z, Barta C, Khaliq S, Mohyuddin A, Kajuna SL, Mehdi SQ, Kidd JR, Kidd KK. Am J Hum Genet. 2007 Oct; 2007 Aug 24. PMID: 17847010.

Microhaplotypes Spreadsheet

This spreadsheet contains all 129 microhaps that have been typed on 55 populations and haplotyped statistically. We have used Informativeness of Rosenberg as a measure of ancestry (I_n) and Global Average Effective Number of Alleles (Ae) (Invest Gen 2015) as a standardized measure of variation.

Download it here.