Shawn Ferguson, PhD
Associate Professor of Cell Biology and of NeuroscienceCards
Appointments
Contact Info
Cell Biology
PO Box 208002, 333 Cedar Street
New Haven, CT 06520-8002
United States
About
Titles
Associate Professor of Cell Biology and of Neuroscience
Biography
Dr. Ferguson earned BSc (Biochemistry-Nutrition) and MSc (Physiology) degrees from the University of Ottawa followed by a PhD in Neuroscience from Vanderbilt University in 2004. From 2004-2010, he was a postdoctoral fellow with Pietro De Camilli in the Department of Cell Biology at Yale. As a postdoctoral fellow, he studied the membrane trafficking mechanisms that allow neurons to make and recycle the synaptic vesicles which are used for the storage and release of neurotransmitters that support communication between neurons. Although centered on the topic of neuronal cell biology, this research resulted in many additional collaborative studies that focused on how similar membrane trafficking mechanisms are adapted to the needs of other cell types. In 2010, Dr. Ferguson was recruited into a faculty position in the Department of Cell Biology at Yale where he currently holds the rank of Associate Professor (tenured). The long-term goal of research in the Ferguson lab is to understand the cell biological mechanisms that allow neurons to meet the challenges imposed by their extreme size, polarity, longevity and specialized membrane trafficking demands related to synaptic transmission. Given the major role played by lysosomes in supporting neuronal health through the clearance of misfolded proteins and damaged organelles, the lab has focused significant efforts to understand how the status of lysosomes is sensed and how cells respond to ensure that lysosome function meets ongoing changes in cellular demand. The ability of lysosomes to degrade misfolded proteins and damaged organelles is of critical importance for neuronal survival as defects in such processes contribute to the development of multiple neurodegenerative diseases. Ongoing neurodegenerative disease projects in the lab address the role of lysosomes in Alzheimer’s disease, amyotrophic lateral sclerosis (ALS), frontotemporal dementia (FTD) and Parkinson’s disease. More recently, the identification of human mutations in the MAPK8IP3, a gene studied by the Ferguson lab in the context of axonal transport of lysosomes within neurons, was identified as the cause of a human neurodevelopmental disorder. To address this problem, Dr. Ferguson and his team are working with The Wolverine Foundation to advance research and discover novel therapeutic approaches to treat the neuro-developmental disease caused by genetic variations in the gene MAPK8IP3. In particular, the Ferguson Lab uses human neurons derived from induced pluripotent stem cells (iPSCs) as a platform for the identification of candidate therapeutic strategies to treat disabilities arising from MAPK8IP3 deficiency.
Appointments
Cell Biology
Associate Professor TenurePrimaryNeuroscience
Associate Professor on TermSecondary
Other Departments & Organizations
- Biochemistry, Quantitative Biology, Biophysics and Structural Biology (BQBS)
- Cell Biology
- Cytoskeletal Dynamics
- Dean's Workshops
- Developmental Cell Biology and Genetics
- Diabetes Research Center
- Ferguson Lab
- Membrane Traffic
- Molecular Cell Biology, Genetics and Development
- Neuroscience
- Wu Tsai Institute
- Yale Combined Program in the Biological and Biomedical Sciences (BBS)
- Yale Ventures
Education & Training
- PhD
- Vanderbilt University (2004)
- MS
- University of Ottawa (1999)
- BS
- University of Ottawa (1997)
Research
Overview
Specific projects under development include:
1. Understanding signaling mechanisms that coordinate lysosomal function (macromolecule degradation) with lysosomal biogenesis. How does a cell match lysosomal capacity with demand? How are signals transduced from the interior of the lysosome to the cytoplasm?
2. Investigation of mechanisms that adapt lysosome function to the unique demands of neurons. In particular, we are highly interested in the mechanisms that support movement of lysosomes over the long distances that are required to provide optimal lysosome function in axons.
3. Investigation of the contributions of lysosome dysfunction to neurodegenerative diseases. We are actively working on projects related to Alzheimer's disease, Parkinson's disease, amyotrophic lateral sclerosis and frontotemporal dementia as well as a neurodevelopmental disorder arising from mutations in the MAPK8IP3 gene.
4. Determining how macrophages and microglia adapt the function of their lysosomes to support efficient degradation and recycling of materials delivered to them by phagocytosis.
Medical Research Interests
ORCID
0000-0002-3092-7718- View Lab Website
Ferguson Lab
Research at a Glance
Yale Co-Authors
Publications Timeline
Research Interests
Pietro De Camilli, MD
Agnes Ferguson, PhD
Hongying Shen, PhD
David Calderwood, PhD
Jaime Grutzendler, MD
Joao Pereira, PhD
Lysosomes
Axonal Transport
Alzheimer Disease
Parkinson Disease
Publications
2024
Lysosomal TBK1 responds to amino acid availability to relieve Rab7-dependent mTORC1 inhibition
Talaia G, Bentley-DeSousa A, Ferguson S. Lysosomal TBK1 responds to amino acid availability to relieve Rab7-dependent mTORC1 inhibition. The EMBO Journal 2024, 43: 3948-3967. PMID: 39103493, PMCID: PMC11405869, DOI: 10.1038/s44318-024-00180-8.Peer-Reviewed Original ResearchCitationsAltmetricConceptsTANK-binding kinase 1MTORC1 activityAmino acid-dependent mTORC1 activationOrganelle quality controlRegulate cell growthElevated amino acid levelsAmino acid levelsAssociated with amyotrophic lateral sclerosisIncreased mTORC1 activityCellular demandSerine 72Amino acid availabilityLysosomal homeostasisSignaling proteinsMacromolecule degradationSites of amino acidsCell growthLysosomal poolMTORC1 inhibitionKinase 1Lysosomal functionAmino acidsInnate immunityLysosomesAmyotrophic lateral sclerosis
2023
A kinesin-1 adaptor complex controls bimodal slow axonal transport of spectrin in Caenorhabditis elegans
Glomb O, Swaim G, Munoz LLancao P, Lovejoy C, Sutradhar S, Park J, Wu Y, Cason S, Holzbaur E, Hammarlund M, Howard J, Ferguson S, Gramlich M, Yogev S. A kinesin-1 adaptor complex controls bimodal slow axonal transport of spectrin in Caenorhabditis elegans. Developmental Cell 2023, 58: 1847-1863.e12. PMID: 37751746, PMCID: PMC10574138, DOI: 10.1016/j.devcel.2023.08.031.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsLRRK2 suppresses lysosome degradative activity in macrophages and microglia through MiT-TFE transcription factor inhibition
Yadavalli N, Ferguson S. LRRK2 suppresses lysosome degradative activity in macrophages and microglia through MiT-TFE transcription factor inhibition. Proceedings Of The National Academy Of Sciences Of The United States Of America 2023, 120: e2303789120. PMID: 37487100, PMCID: PMC10400961, DOI: 10.1073/pnas.2303789120.Peer-Reviewed Original ResearchCitationsAltmetricCab45 deficiency leads to the mistargeting of progranulin and prosaposin and aberrant lysosomal positioning
Tran M, Tüshaus J, Kim Y, Ramazanov B, Devireddy S, Lichtenthaler S, Ferguson S, von Blume J. Cab45 deficiency leads to the mistargeting of progranulin and prosaposin and aberrant lysosomal positioning. Traffic 2023, 24: 4-19. PMID: 36398980, PMCID: PMC9825660, DOI: 10.1111/tra.12873.Peer-Reviewed Original ResearchCitationsAltmetric
2022
ER-lysosome lipid transfer protein VPS13C/PARK23 prevents aberrant mtDNA-dependent STING signaling
Hancock-Cerutti W, Wu Z, Xu P, Yadavalli N, Leonzino M, Tharkeshwar AK, Ferguson SM, Shadel GS, De Camilli P. ER-lysosome lipid transfer protein VPS13C/PARK23 prevents aberrant mtDNA-dependent STING signaling. Journal Of Cell Biology 2022, 221: e202106046. PMID: 35657605, PMCID: PMC9170524, DOI: 10.1083/jcb.202106046.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsConceptsParkinson's diseasePD pathogenesisLeucine-rich repeat kinase 2 (LRRK2) G2019S mutationCGAS-STING pathwayAccumulation of lysosomesDNA-sensing cGAS-STING pathwayImmune activationLipid profileSTING signalingG2019S mutationAutosomal recessive Parkinson's diseaseRecessive Parkinson's diseaseModel human cell linesHuman cell linesCell linesPathogenesisLate endosomes/lysosomesDiseaseVPS13CEndosomes/lysosomesCurrent studyTransfer proteinActivationCellsPathwayJIP3 links lysosome transport to regulation of multiple components of the axonal cytoskeleton
Rafiq N, Lyons L, Gowrishankar S, De Camilli P, Ferguson S. JIP3 links lysosome transport to regulation of multiple components of the axonal cytoskeleton. Communications Biology 2022, 5: 5. PMID: 35013510, PMCID: PMC8748971, DOI: 10.1038/s42003-021-02945-x.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and Concepts
2021
Efficient progranulin exit from the ER requires its interaction with prosaposin, a Surf4 cargo
Devireddy S, Ferguson SM. Efficient progranulin exit from the ER requires its interaction with prosaposin, a Surf4 cargo. Journal Of Cell Biology 2021, 221: e202104044. PMID: 34919127, PMCID: PMC8689666, DOI: 10.1083/jcb.202104044.Peer-Reviewed Original ResearchCitationsAltmetricTSC2 regulates lysosome biogenesis via a non-canonical RAGC and TFEB-dependent mechanism
Alesi N, Akl EW, Khabibullin D, Liu HJ, Nidhiry AS, Garner ER, Filippakis H, Lam HC, Shi W, Viswanathan SR, Morroni M, Ferguson SM, Henske EP. TSC2 regulates lysosome biogenesis via a non-canonical RAGC and TFEB-dependent mechanism. Nature Communications 2021, 12: 4245. PMID: 34253722, PMCID: PMC8275687, DOI: 10.1038/s41467-021-24499-6.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsMeSH KeywordsAnimalsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsCarcinoma, Renal CellCell NucleusCell ProliferationFemaleGene Expression RegulationHEK293 CellsHeLa CellsHumansKidney NeoplasmsLysosomesMiceMice, Inbred NODMice, SCIDMonomeric GTP-Binding ProteinsOrganelle BiogenesisPhosphorylationPhosphoserineProtein TransportProto-Oncogene ProteinsTranscription, GeneticTuberous Sclerosis Complex 2 ProteinTumor Suppressor ProteinsConceptsTranscription factor EBTSC2-deficient cellsLysosome biogenesisLysosomal biogenesisDeficient cellsRapamycin complex 1TSC1/2 complexTFEB phosphorylationTuberous sclerosis complexTSC proteinsMaster regulatorBiogenesisMechanistic targetRagCCritical regulatorFolliculinPhosphorylationDependent sitesRegulatorProteinOverexpressionTSC2 mutationsCellsGTPaseMTORC1Overlapping roles of JIP3 and JIP4 in promoting axonal transport of lysosomes in human iPSC-derived neurons
Gowrishankar S, Lyons L, Rafiq NM, Roczniak-Ferguson A, De Camilli P, Ferguson SM. Overlapping roles of JIP3 and JIP4 in promoting axonal transport of lysosomes in human iPSC-derived neurons. Molecular Biology Of The Cell 2021, 32: 1094-1103. PMID: 33788575, PMCID: PMC8351540, DOI: 10.1091/mbc.e20-06-0382.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsConceptsAxonal transportAlzheimer's disease-related amyloid precursor proteinAmyloidogenic APP processingAmyloid precursor proteinDependence of neuronsHuman iPSCNeuronal cell biologyAPP processingAxonal lysosomesNeuronsLoss of JIP3Lysosome abundanceMovement of lysosomesPrecursor proteinCellular modelCritical regulatorStem cellsPluripotent stem cellsAβ42 peptideIPSCsLysosome transportLysosomesOverlapping rolePathology
2020
PLD3 is a neuronal lysosomal phospholipase D associated with β‐amyloid plaques and cognitive function in Alzheimer’s disease
Nackenoff A, Hohman T, Neuner S, Akers C, Weitzel N, Shostak A, Ferguson S, Bennett D, Schneider J, Jefferson A, Kaczorowski C, Schrag M. PLD3 is a neuronal lysosomal phospholipase D associated with β‐amyloid plaques and cognitive function in Alzheimer’s disease. Alzheimer's & Dementia 2020, 16 DOI: 10.1002/alz.043301.Peer-Reviewed Original ResearchConceptsSporadic Alzheimer's diseaseΒ-amyloid plaquesAlzheimer's diseaseCerebral β-amyloidosisΒ-amyloid pathologyPhospholipase D3Normal human brainPre-frontal cortexAD-affected brainsFear conditioning taskReligious Orders StudyDystrophic neuritesAD brainΒ-amyloidosisMouse modelCognitive declineMouse brainPhospholipase D isoformsCognitive functionPathology severityMouse strainsDiseaseBrainRush MemoryMRNA levels
News & Links
Media
- Confocal micrograph of microtubules (SPY-tubulin label) in a human induced pluripotent stem cell-derived cortical neuron.
News
- December 15, 2024
Kavli Institute at Yale: 20 Years of Innovation
- August 05, 2024Source: The EMBO Journal
A new pathway for nutrient response at lysosomes
- November 01, 2023Source: bioRxiv
A pathway that links lysosome stress to activation of a Parkinson's disease associated protein kinase
- July 25, 2023Source: Yale News
Study Reveals Insights Into Link Between a Genetic Mutation and Parkinson’s
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Cell Biology
PO Box 208002, 333 Cedar Street
New Haven, CT 06520-8002
United States
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Fl 3rd , Rm Room 344
New Haven, CT 06510