2024
PubMed Computed Authors in 2024: an open resource of disambiguated author names in biomedical literature
Tian S, Chen Q, Comeau D, Wilbur W, Lu Z. PubMed Computed Authors in 2024: an open resource of disambiguated author names in biomedical literature. Bioinformatics 2024, 40: btae672. PMID: 39520405, PMCID: PMC11588201, DOI: 10.1093/bioinformatics/btae672.Peer-Reviewed Original ResearchAuthor name disambiguationAuthor namesBiomedical literature searchWeb APIsEnhancement algorithmAuthority datasetsQueryBiomedical literatureDatasetAuthors' algorithmImproved accuracyIndividual researchersAlgorithmPubMed articlesSupplementary dataDisambiguationORCIDLiterature retrievalDownloadRetrievalWebAPIComprehensive datasetBioinformaticsGeneGPT: augmenting large language models with domain tools for improved access to biomedical information
Jin Q, Yang Y, Chen Q, Lu Z. GeneGPT: augmenting large language models with domain tools for improved access to biomedical information. Bioinformatics 2024, 40: btae075. PMID: 38341654, PMCID: PMC10904143, DOI: 10.1093/bioinformatics/btae075.Peer-Reviewed Original ResearchAPI callsWeb APIsLanguage modelState-of-the-art performanceMulti-hop questionsState-of-the-artDomain-specific toolsDecoding algorithmNational Center for Biotechnology InformationGPT-3Biomedical informationDatabase utilizationExperimental resultsAPITaskDomain toolsLearningChatGPTSpecialized knowledgeInformationLanguageGenomic questionsAlgorithmDatasetBiotechnology Information
2020
LitCovid: an open database of COVID-19 literature
Chen Q, Allot A, Lu Z. LitCovid: an open database of COVID-19 literature. Nucleic Acids Research 2020, 49: d1534-d1540. PMID: 33166392, PMCID: PMC7778958, DOI: 10.1093/nar/gkaa952.Peer-Reviewed Original ResearchConceptsSerious information overloadCuration workflowData miningInformation overloadCollected articlesInformation needsOpen databaseManual curationNews articlesCOVID-19 literatureLiterature resourcesRapid growthUsersCOVID-19 researchMiningWorkflowAlgorithmCurationDate scientific informationDatabaseInformationGeneral publicResourcesAccessText