2023
Automated and manual segmentation of the hippocampus in human infants
Fel J, Ellis C, Turk-Browne N. Automated and manual segmentation of the hippocampus in human infants. Developmental Cognitive Neuroscience 2023, 60: 101203. PMID: 36791555, PMCID: PMC9957787, DOI: 10.1016/j.dcn.2023.101203.Peer-Reviewed Original ResearchConceptsManual segmentationHippocampal segmentationInter-rater reliabilityAutomated SegmentationSegmentation methodSegmentationAnatomical MRI scansEarly hippocampal developmentHead motionFreeSurfer softwareSoftwareHippocampal developmentMRI scansHippocampal structureAwake infantsInfantsHippocampusFMRI protocolAnatomical scansGold standardAdult templateHuman infantsScan qualityScansProtocol
2021
BrainIAK: The Brain Imaging Analysis Kit
Kumar M, Anderson M, Antony J, Baldassano C, Brooks P, Cai M, Chen P, Ellis C, Henselman-Petrusek G, Huberdeau D, Hutchinson J, Li Y, Lu Q, Manning J, Mennen A, Nastase S, Richard H, Schapiro A, Schuck N, Shvartsman M, Sundaram N, Suo D, Turek J, Turner D, Vo V, Wallace G, Wang Y, Williams J, Zhang H, Zhu X, Capotă M, Cohen J, Hasson U, Li K, Ramadge P, Turk-Browne N, Willke T, Norman K. BrainIAK: The Brain Imaging Analysis Kit. Aperture Neuro 2021, 1: 10.52294/31bb5b68-2184-411b-8c00-a1dacb61e1da. PMID: 35939268, PMCID: PMC9351935, DOI: 10.52294/31bb5b68-2184-411b-8c00-a1dacb61e1da.Peer-Reviewed Original ResearchHigh-performance compute clusterData analysis problemsCompute clustersData simulatorJupyter notebooksComputational innovationsPython packageSame codeReal dataAnalysis problemKey problemReal-time functional magnetic resonance imagingMarkov modelEvent segmentationAforementioned techniquesAnalysis techniquesSimilarity analysisSegmentationLaptopBayesian versionFunctional alignmentSimulatorTechniqueRepresentational similarity analysisVariety of techniques