2024
Neuronal-specific methylome and hydroxymethylome analysis reveal significant loci associated with alcohol use disorder
Andrade-Brito D, Núñez-Ríos D, Martínez-Magaña J, Nagamatsu S, Rompala G, Zillich L, Witt S, Clark S, Lattig M, Montalvo-Ortiz J, Alvarez V, Benedek D, Che A, Cruz D, Davis D, Girgenti M, Hoffman E, Holtzheimer P, Huber B, Kaye A, Keane T, Krystal J, Labadorf A, Logue M, Marx B, Mash D, McKee A, Miller M, Montalvo-Ortiz J, Noller C, Schnurr P, Scott W, Stein T, Ursano R, Williamson D, Wolf E, Young K. Neuronal-specific methylome and hydroxymethylome analysis reveal significant loci associated with alcohol use disorder. Frontiers In Genetics 2024, 15: 1345410. PMID: 38633406, PMCID: PMC11021708, DOI: 10.3389/fgene.2024.1345410.Peer-Reviewed Original ResearchAssociated with alcohol use disorderAlcohol use disorderOrbitofrontal cortexEpigenome-wide association studiesUse disorderStudy of alcohol use disorderHuman orbitofrontal cortexAlcohol-related traitsHuman brainPostmortem brain samplesHuman postmortem brain samplesEnrichment analysisDifferential CpG sitesPostmortem brain tissueGenome-wide levelOxidative bisulfite sequencingAssessed 5Functional enrichment analysisBrain tissueFalse discovery rateBisulfite sequencingAssociation studiesDifferential methylationIdentified genesDNA methylation
2021
Genome-wide DNA methylation profiling in nonagenarians suggests an effect of PM20D1 in late onset Alzheimer’s disease
Coto-Vílchez C, Martínez-Magaña J, Mora-Villalobos L, Valerio D, Genis-Mendoza A, Silverman J, Nicolini H, Raventós H, Chavarria-Soley G. Genome-wide DNA methylation profiling in nonagenarians suggests an effect of PM20D1 in late onset Alzheimer’s disease. CNS Spectrums 2021, 28: 174-182. PMID: 34911598, DOI: 10.1017/s109285292100105x.Peer-Reviewed Original ResearchGenome-wide DNA methylation profilingEpigenetic clocksWhole blood DNA methylation profilesQuantitative loci analysisCell cycle regulationDNA methylation profilesDNA methylation profilingEpigenetic ageMQTL SNPsBlood DNA methylation profilesHorvath's epigenetic clockInfinium MethylationEPIC BeadChipCycle regulationSynthesis of ceramideDifferential methylationMethylation profilingMethylation profilesLocus analysisMethylation levelsAverage methylationGenesMethylation analysisMethylationEPIC BeadChipPM20D1DMRs