Featured Publications
Characteristics Associated With Racial/Ethnic Disparities in COVID-19 Outcomes in an Academic Health Care System
Gu T, Mack J, Salvatore M, Sankar S, Valley T, Singh K, Nallamothu B, Kheterpal S, Lisabeth L, Fritsche L, Mukherjee B. Characteristics Associated With Racial/Ethnic Disparities in COVID-19 Outcomes in an Academic Health Care System. JAMA Network Open 2020, 3: e2025197. PMID: 33084902, PMCID: PMC7578774, DOI: 10.1001/jamanetworkopen.2020.25197.Peer-Reviewed Original ResearchMeSH KeywordsAdultAgedBetacoronavirusBlack or African AmericanComorbidityCoronavirus InfectionsCOVID-19Diabetes Mellitus, Type 2FemaleHealth Status DisparitiesHospitalizationHumansIntensive Care UnitsKidney DiseasesMaleMichiganMiddle AgedNeoplasmsObesityOdds RatioPandemicsPneumonia, ViralPopulation DensityRetrospective StudiesRisk FactorsSARS-CoV-2White PeopleConceptsAssociated with higher riskInternational Classification of DiseasesRisk of hospitalizationPreexisting type 2 diabetesHigher risk of hospitalizationClassification of DiseasesType 2 diabetesCOVID-19 outcomesRacial/ethnic disparitiesWhite patientsBlack patientsIntensive care unitInternational ClassificationResidential-level socioeconomic characteristicsOdds ratioStatistically significant racial differencesHigh riskAssociated with higher risk of hospitalizationNon-Hispanic blacksAssociation of risk factorsNon-Hispanic whitesMichigan Department of HealthAssociated with increased risk of hospitalizationComorbidity scoreDepartment of HealthExploiting Gene-Environment Independence for Analysis of Case–Control Studies: An Empirical Bayes-Type Shrinkage Estimator to Trade-Off Between Bias and Efficiency
Mukherjee B, Chatterjee N. Exploiting Gene-Environment Independence for Analysis of Case–Control Studies: An Empirical Bayes-Type Shrinkage Estimator to Trade-Off Between Bias and Efficiency. Biometrics 2007, 64: 685-694. PMID: 18162111, DOI: 10.1111/j.1541-0420.2007.00953.x.Peer-Reviewed Original ResearchConceptsGene-environment independenceShrinkage estimatorsLog odds ratio parametersCase-control dataGene-environment independence assumptionOdds ratio parametersCase-control estimatorsData-adaptive fashionData exampleProspective logistic regression analysisBinary exposureGene-environment associationsIndependence assumptionLogistic regression analysisCase-onlyMaximum likelihood frameworkEstimationSample sizeBinary genesRegression analysisChatterjeeExamplesWeighted averageAssumptions
2019
Associations between childhood maltreatment latent classes and eating disorder symptoms in a nationally representative sample of young adults in the United States
Hazzard V, Bauer K, Mukherjee B, Miller A, Sonneville K. Associations between childhood maltreatment latent classes and eating disorder symptoms in a nationally representative sample of young adults in the United States. Child Abuse & Neglect 2019, 98: 104171. PMID: 31546098, PMCID: PMC6885127, DOI: 10.1016/j.chiabu.2019.104171.Peer-Reviewed Original ResearchConceptsEating disorder symptomsFasting/skipping mealsDisorder symptomsEating-related concernsChildhood maltreatmentPhysical abusePhysical neglectAssociated with eating disorder symptomsLatent classesSexual abuseAssociated with eating disordersChildhood physical neglectYoung adultsNationally representative sampleMulti-type maltreatmentMaltreatment profilesLogistic regression modelsEating disordersLatent class analysisCompensatory behaviorsU.S. young adultsHigh riskStudy of AdolescentLongitudinal Study of AdolescentRepresentative sample
2017
Longitudinal Profiles of Thyroid Hormone Parameters in Pregnancy and Associations with Preterm Birth
Johns L, Ferguson K, McElrath T, Mukherjee B, Seely E, Meeker J. Longitudinal Profiles of Thyroid Hormone Parameters in Pregnancy and Associations with Preterm Birth. PLOS ONE 2017, 12: e0169542. PMID: 28060899, PMCID: PMC5217954, DOI: 10.1371/journal.pone.0169542.Peer-Reviewed Original ResearchConceptsRisk of preterm birthPreterm birthNested case-control study of preterm birthThyroid hormonesSubclinical alterationsPregnant womenCase-control study of preterm birthThyroid diseaseOdds of preterm birthOngoing birth cohort studyNested case-control studyStudy of preterm birthAssociated with preterm birthBirth cohort studyTime pointsMultivariate logistic regression modelOverall preterm birthSpontaneous preterm birthWeeks of gestationClinical thyroid diseaseOvert thyroid diseaseThyroid hormone parametersMaternal thyroid hormone concentrationsMaternal thyroid hormonesLogistic regression models
2016
On-time Measles and Pneumococcal Vaccination of Shanghai Children
Wagner A, Sun X, Huang Z, Ren J, Mukherjee B, Wells E, Boulton M. On-time Measles and Pneumococcal Vaccination of Shanghai Children. The Pediatric Infectious Disease Journal 2016, 35: e311-e317. PMID: 27294307, DOI: 10.1097/inf.0000000000001267.Peer-Reviewed Original ResearchConceptsPneumococcal conjugate vaccinePneumococcal conjugate vaccine administrationMeasles-containing vaccineMonths of ageShanghai Immunization Program Information SystemProportion of infant deathsShanghai childrenComparator vaccineDose 2Logistic regression modelsConjugate vaccineDose 1Pneumococcal vaccineImmunization scheduleVaccination outcomesInfant deathsPediatric immunization scheduleVaccineMonthsDisease control effortsLate vaccinationOddsAdministrationChina censusVaccination levelsA splicing variant of TERT identified by GWAS interacts with menopausal estrogen therapy in risk of ovarian cancer
Lee A, Bomkamp A, Bandera E, Jensen A, Ramus S, Goodman M, Rossing M, Modugno F, Moysich K, Chang‐Claude J, Rudolph A, Gentry‐Maharaj A, Terry K, Gayther S, Cramer D, Doherty J, Schildkraut J, Kjaer S, Ness R, Menon U, Berchuck A, Mukherjee B, Roman L, Pharoah P, Chenevix‐Trench G, Olson S, Hogdall E, Wu A, Pike M, Stram D, Pearce C, Consortium F. A splicing variant of TERT identified by GWAS interacts with menopausal estrogen therapy in risk of ovarian cancer. International Journal Of Cancer 2016, 139: 2646-2654. PMID: 27420401, PMCID: PMC5500237, DOI: 10.1002/ijc.30274.Peer-Reviewed Original ResearchMeSH KeywordsAge FactorsAgedAged, 80 and overAllelesAlternative SplicingCase-Control StudiesDisease SusceptibilityEstrogen Replacement TherapyFemaleGene-Environment InteractionGenome-Wide Association StudyGenotypeHumansMenopauseMiddle AgedOdds RatioOvarian NeoplasmsPolymorphism, Single NucleotidePopulation SurveillanceRiskTelomeraseConceptsOvarian Cancer Association ConsortiumEstrogen-alone therapyOvarian cancer riskEndometrioid ovarian cancerOvarian cancerET usersET useT alleleAssociated with ovarian cancer riskCancer riskLong-term ET usersOvarian cancer susceptibility lociRisk of ovarian cancerSusceptibility variantsMenopausal estrogen therapyCancer susceptibility lociSerous ovarian cancerSplice variantsNon-usersCase-control studyConditional logistic regressionGenome-wide association studiesIncreased risk of diseaseEndometrioid histotypeEstrogen therapyAssociation of Environmental Toxins With Amyotrophic Lateral Sclerosis
Su F, Goutman S, Chernyak S, Mukherjee B, Callaghan B, Batterman S, Feldman E. Association of Environmental Toxins With Amyotrophic Lateral Sclerosis. JAMA Neurology 2016, 73: 803-11. PMID: 27159543, PMCID: PMC5032145, DOI: 10.1001/jamaneurol.2016.0594.Peer-Reviewed Original ResearchMeSH KeywordsAgedAmyotrophic Lateral SclerosisCase-Control StudiesEnvironmental ExposureEnvironmental PollutantsFemaleGas Chromatography-Mass SpectrometryHumansMaleMichiganMiddle AgedMultivariate AnalysisOccupational ExposureOdds RatioOutcome Assessment, Health CareRetrospective StudiesRisk FactorsSurveys and QuestionnairesConceptsBrominated flame retardantsPersistent environmental pollutantsResidential exposureOrganochlorine pesticidesPolychlorinated biphenylsOdds of ALSAssociation of occupational exposureDisease risk factorsExposure time windowsEnvironmental pollutionRisk factorsModifiable risk factorsMultivariate modelOccupational exposureLogistic regression modelsCase-control studySurvey dataFamily history of amyotrophic lateral sclerosisExposure windowsIncreased oddsFamily historyAssociated with amyotrophic lateral sclerosisHistory of amyotrophic lateral sclerosisRegression modelsMilitary serviceMicrosatellite Alterations With Allelic Loss at 9p24.2 Signify Less-Aggressive Colorectal Cancer Metastasis
Koi M, Garcia M, Choi C, Kim H, Koike J, Hemmi H, Nagasaka T, Okugawa Y, Toiyama Y, Kitajima T, Imaoka H, Kusunoki M, Chen Y, Mukherjee B, Boland C, Carethers J. Microsatellite Alterations With Allelic Loss at 9p24.2 Signify Less-Aggressive Colorectal Cancer Metastasis. Gastroenterology 2016, 150: 944-955. PMID: 26752111, PMCID: PMC4808397, DOI: 10.1053/j.gastro.2015.12.032.Peer-Reviewed Original ResearchMeSH KeywordsBiomarkers, TumorChi-Square DistributionChromosome AberrationsChromosomes, Human, Pair 9Colorectal NeoplasmsDisease ProgressionDisease-Free SurvivalFemaleGenetic Predisposition to DiseaseHumansJapanKaplan-Meier EstimateLiver NeoplasmsLogistic ModelsLoss of HeterozygosityMaleMicrosatellite RepeatsMiddle AgedNeoplasm Recurrence, LocalNeoplasm StagingOdds RatioPhenotypeProportional Hazards ModelsProto-Oncogene Proteins B-rafProto-Oncogene Proteins p21(ras)Republic of KoreaRisk FactorsTime FactorsTreatment OutcomeConceptsPrimary colorectal tumorsLoss of heterozygosityLiver metastasesColorectal cancerColorectal tumorsElevated microsatellite alterationsMicrosatellite alterationsStage IICurative treatment of patientsStage III colorectal cancerOverall survival of patientsSurvival of patientsIII colorectal cancerTumor to liverColorectal cancer recurrenceTreatment of patientsMatched liver metastasesCancer cell nucleiMatched metastasesDisease recurrenceOverall survivalPrognostic factorsAllelic lossNo significant differenceCurative treatment
2015
Genome-wide association study of colorectal cancer identifies six new susceptibility loci
Schumacher FR, Schmit SL, Jiao S, Edlund CK, Wang H, Zhang B, Hsu L, Huang SC, Fischer CP, Harju JF, Idos GE, Lejbkowicz F, Manion FJ, McDonnell K, McNeil CE, Melas M, Rennert HS, Shi W, Thomas DC, Van Den Berg DJ, Hutter CM, Aragaki AK, Butterbach K, Caan BJ, Carlson CS, Chanock SJ, Curtis KR, Fuchs CS, Gala M, Giovannucci EL, Gogarten SM, Hayes RB, Henderson B, Hunter DJ, Jackson RD, Kolonel LN, Kooperberg C, Küry S, LaCroix A, Laurie CC, Laurie CA, Lemire M, Levine D, Ma J, Makar KW, Qu C, Taverna D, Ulrich CM, Wu K, Kono S, West DW, Berndt SI, Bezieau S, Brenner H, Campbell PT, Chan AT, Chang-Claude J, Coetzee GA, Conti DV, Duggan D, Figueiredo JC, Fortini BK, Gallinger SJ, Gauderman WJ, Giles G, Green R, Haile R, Harrison TA, Hoffmeister M, Hopper JL, Hudson TJ, Jacobs E, Iwasaki M, Jee SH, Jenkins M, Jia WH, Joshi A, Li L, Lindor NM, Matsuo K, Moreno V, Mukherjee B, Newcomb PA, Potter JD, Raskin L, Rennert G, Rosse S, Severi G, Schoen RE, Seminara D, Shu XO, Slattery ML, Tsugane S, White E, Xiang YB, Zanke BW, Zheng W, Le Marchand L, Casey G, Gruber SB, Peters U. Genome-wide association study of colorectal cancer identifies six new susceptibility loci. Nature Communications 2015, 6: 7138. PMID: 26151821, PMCID: PMC4967357, DOI: 10.1038/ncomms8138.Peer-Reviewed Original ResearchConceptsNew susceptibility lociAssociation studiesSusceptibility lociSignificant genetic lociGenome-wide association studiesGenome-wide thresholdCommon genetic variantsRare pathogenic mutationsTwo-stage association studyGenetic lociGenetic epidemiology studiesGenetic variantsLociUnderlying biological mechanismsPathogenic mutationsBiological mechanismsAsian ConsortiumGenetic susceptibilityMutationsAdditional insightColorectal cancerCancerVariants
2014
Repeated measures of urinary oxidative stress biomarkers during pregnancy and preterm birth
Ferguson K, McElrath T, Chen Y, Loch-Caruso R, Mukherjee B, Meeker J. Repeated measures of urinary oxidative stress biomarkers during pregnancy and preterm birth. American Journal Of Obstetrics And Gynecology 2014, 212: 208.e1-208.e8. PMID: 25111586, PMCID: PMC4312513, DOI: 10.1016/j.ajog.2014.08.007.Peer-Reviewed Original ResearchConceptsSpontaneous preterm birthPreterm birthAssociated with increased odds of spontaneous preterm birthCases of spontaneous preterm birthOdds of spontaneous preterm birthPathways to preterm birthMechanisms of preterm birthNested case-control studyLevels of 8-isoprostaneOxidative stressUrinary biomarkers of oxidative stressConcentrations of 8-isoprostaneUrinary oxidative stress biomarkersLevels of 8-OHdGMaternal oxidative stressCase-control studyProspective birth cohortUrinary 8-OHdG concentrationsAssociated with increased oddsInvestigate oxidative stressDelivered pretermBiomarkers of oxidative stressPlacental originUrinary concentrations of 8-isoprostanePretermEnvironmental Risk Score as a New Tool to Examine Multi-Pollutants in Epidemiologic Research: An Example from the NHANES Study Using Serum Lipid Levels
Park S, Tao Y, Meeker J, Harlow S, Mukherjee B. Environmental Risk Score as a New Tool to Examine Multi-Pollutants in Epidemiologic Research: An Example from the NHANES Study Using Serum Lipid Levels. PLOS ONE 2014, 9: e98632. PMID: 24901996, PMCID: PMC4047033, DOI: 10.1371/journal.pone.0098632.Peer-Reviewed Original ResearchConceptsEnvironmental risk scoreLipid outcomesEpidemiological researchNational Health and Nutrition Examination SurveyHealth and Nutrition Examination SurveyRisk scoreNutrition Examination SurveyAdverse health responsesSocio-demographic factorsMulti-pollutant exposuresDevelopment of chronic diseasesBody mass indexExamination SurveySerum nutrient levelsMulti-pollutant approachSociodemographic factorsHealth responseChronic diseasesSingle-pollutantDisease riskMass indexEpidemiological studiesNHANES studyRisk predictionMulti-pollutantsLongitudinal Profiling of Inflammatory Cytokines and C‐reactive Protein during Uncomplicated and Preterm Pregnancy
Ferguson K, McElrath T, Chen Y, Mukherjee B, Meeker J. Longitudinal Profiling of Inflammatory Cytokines and C‐reactive Protein during Uncomplicated and Preterm Pregnancy. American Journal Of Reproductive Immunology 2014, 72: 326-336. PMID: 24807462, PMCID: PMC4573571, DOI: 10.1111/aji.12265.Peer-Reviewed Original ResearchConceptsPreterm birthC-reactive proteinAssociated with increased oddsInflammation markersAssociated with increased odds of spontaneous preterm birthIL-10Associated with increased risk of preterm birthOdds of spontaneous preterm birthEtiology of preterm deliveryPredictors of preterm birthIL-6Risk of preterm birthPreterm premature ruptureSpontaneous preterm laborSpontaneous preterm birthIntrauterine growth restrictionNested case-control studyProfile of inflammatory cytokinesAssociated with increased riskCase-control studyPreterm laborPreterm pregnanciesPreterm deliveryGestational agePremature rupture
2013
Elevated Risk of Prostate Cancer Among Men With Lynch Syndrome
Raymond V, Mukherjee B, Wang F, Huang S, Stoffel E, Kastrinos F, Syngal S, Cooney K, Gruber S. Elevated Risk of Prostate Cancer Among Men With Lynch Syndrome. Journal Of Clinical Oncology 2013, 31: 1713-1718. PMID: 23530095, PMCID: PMC3641694, DOI: 10.1200/jco.2012.44.1238.Peer-Reviewed Original ResearchConceptsLynch syndromeCumulative lifetime riskRisk of prostate cancerAge-specific cumulative riskLifetime risk of prostate cancerFamilial cancer registryGeneral populationHazard ratioCumulative risk of prostate cancerModified segregation analysisProstate cancerFourth-degree relativesCumulative riskProstate cancer riskLS familiesCancer RegistryCancer riskLifetime riskCases of prostate cancerPopulation riskMismatch repair-deficient phenotypeWald-type CICancer diagnosisMutation carriersElevated risk
2012
On the equivalence of posterior inference based on retrospective and prospective likelihoods: application to a case‐control study of colorectal cancer
Ghosh M, Song J, Forster J, Mitra R, Mukherjee B. On the equivalence of posterior inference based on retrospective and prospective likelihoods: application to a case‐control study of colorectal cancer. Statistics In Medicine 2012, 31: 2196-2208. PMID: 22495822, DOI: 10.1002/sim.5358.Peer-Reviewed Original ResearchConceptsPosterior inferenceCase-control study of colorectal cancerOdds ratio parametersCategorical response dataBayesian analysis of dataStudy of colorectal cancerCase-control studyGeneral classProspective likelihoodSimulation studyCategorical responsesBayesian analysisColorectal cancerMatched case-control studyInferenceAnalysis of dataResponse dataPriorsRetrospective designRetrospective modelEquivalence
2011
Asthma exacerbation and proximity of residence to major roads: a population-based matched case-control study among the pediatric Medicaid population in Detroit, Michigan
Li S, Batterman S, Wasilevich E, Elasaad H, Wahl R, Mukherjee B. Asthma exacerbation and proximity of residence to major roads: a population-based matched case-control study among the pediatric Medicaid population in Detroit, Michigan. Environmental Health 2011, 10: 34. PMID: 21513554, PMCID: PMC3224543, DOI: 10.1186/1476-069x-10-34.Peer-Reviewed Original ResearchConceptsConditional logistic regressionPopulation-based matched case-control studyPediatric Medicaid populationCase-control studyMedicaid populationProximity of residenceLogistic regressionConditional logistic regression modelsElevated risk of asthmaRisk of asthmaEmergency department visitsCase-control analysisLogistic regression modelsHigh-risk populationTraffic-related pollutantsAsthma outcomesDepartment visitsAsthma eventsAsthma claimAsthma-related eventsAsthma casesEcological biasOdds ratioInvestigate associationsMethodThis study
2008
Tests for gene‐environment interaction from case‐control data: a novel study of type I error, power and designs
Mukherjee B, Ahn J, Gruber S, Rennert G, Moreno V, Chatterjee N. Tests for gene‐environment interaction from case‐control data: a novel study of type I error, power and designs. Genetic Epidemiology 2008, 32: 615-626. PMID: 18473390, DOI: 10.1002/gepi.20337.Peer-Reviewed Original ResearchConceptsGene-environment independence assumptionCase-control studyGene-environment interactionsGene-environment associationsCase-onlyCase-control study of colorectal cancerDetection of gene-environment interactionsType I errorGene-environment dependenceStudy of colorectal cancerGene-environment independenceEffect of genetic susceptibilityCase-only methodCase-only estimatorCase-control estimatorsCase-control dataGene-environment effectsCase-control designCase-control methodCase-control analysisGlutathione S-transferase M1Empirical-BayesEpidemiological researchCase-controlColorectal cancer
2007
Analysis of matched case–control data with multiple ordered disease states: possible choices and comparisons
Mukherjee B, Liu I, Sinha S. Analysis of matched case–control data with multiple ordered disease states: possible choices and comparisons. Statistics In Medicine 2007, 26: 3240-3257. PMID: 17206600, DOI: 10.1002/sim.2790.Peer-Reviewed Original ResearchConceptsConditional logistic regressionStratum-specific nuisance parametersCase-control dataAdjacent-category logit modelCase-control studyOrdered categorical dataConditional-likelihood approachLikelihood-based approachNuisance parametersProportional-odds modelCumulative logitsSimulation studyAnalyse such dataMantel-Haenszel approachCumulative logit modelNatural orderPotential risk factorsStages of cancerReference categoryCategorical dataLogistic regressionOrdinal natureEffect of potential risk factorsLow birthweightRisk factors