Hyunjae Kim
Postdoctoral Associate in Biomedical Informatics and Data ScienceAbout
Research
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Featured Publications
Small language models learn enhanced reasoning skills from medical textbooks
Kim H, Hwang H, Lee J, Park S, Kim D, Lee T, Yoon C, Sohn J, Park J, Reykhart O, Fetherston T, Choi D, Kwak S, Chen Q, Kang J. Small language models learn enhanced reasoning skills from medical textbooks. Npj Digital Medicine 2025, 8: 240. PMID: 40316765, PMCID: PMC12048634, DOI: 10.1038/s41746-025-01653-8.Peer-Reviewed Original Research
2025
BEnchmarking Large Language Models for Ophthalmology (BELO): An Expert-Curated Data Set and Evaluation Framework for Knowledge and Reasoning
Srinivasan S, Ai X, Lo T, Gilson A, Zou M, Zou K, Kim H, Yang M, Pushpanathan K, Yew S, Loke W, Goh J, Chen Y, Kong Y, Fu E, Ong M, Nwanyanwu K, Dave A, Li K, Sun C, Chia M, Yang G, Wong W, Chen D, Liu D, Singer M, Antaki F, Del Priore L, Jonas J, Adelman R, Chen Q, Tham Y. BEnchmarking Large Language Models for Ophthalmology (BELO): An Expert-Curated Data Set and Evaluation Framework for Knowledge and Reasoning. Ophthalmology Science 2025, 6: 101050. PMID: 41696659, PMCID: PMC12906013, DOI: 10.1016/j.xops.2025.101050.Peer-Reviewed Original ResearchOphthalmological Question Answering and Reasoning Using OpenAI o1 vs Other Large Language Models
Srinivasan S, Ai X, Zou M, Zou K, Kim H, Lo T, Pushpanathan K, Yang G, Goh J, Kong Y, Li A, Singer M, Jin K, Antaki F, Chen D, Liu D, Adelman R, Chen Q, Tham Y. Ophthalmological Question Answering and Reasoning Using OpenAI o1 vs Other Large Language Models. JAMA Ophthalmology 2025, 143: 740-748. PMID: 40742581, PMCID: PMC12314776, DOI: 10.1001/jamaophthalmol.2025.2413.Peer-Reviewed Original ResearchETHIC: Evaluating Large Language Models on Long-Context Tasks with High Information Coverage
Lee T, Yoon C, Jang K, Lee D, Song M, Kim H, Kang J. ETHIC: Evaluating Large Language Models on Long-Context Tasks with High Information Coverage. 2025, 5497-5512. DOI: 10.18653/v1/2025.naacl-long.283.Peer-Reviewed Original ResearchRationale-Guided Retrieval Augmented Generation for Medical Question Answering
Sohn J, Park Y, Yoon C, Park S, Hwang H, Sung M, Kim H, Kang J. Rationale-Guided Retrieval Augmented Generation for Medical Question Answering. 2025, 12739-12753. DOI: 10.18653/v1/2025.naacl-long.635.Peer-Reviewed Original Research
2024
Augmenting biomedical named entity recognition with general-domain resources
Yin Y, Kim H, Xiao X, Wei C, Kang J, Lu Z, Xu H, Fang M, Chen Q. Augmenting biomedical named entity recognition with general-domain resources. Journal Of Biomedical Informatics 2024, 159: 104731. PMID: 39368529, DOI: 10.1016/j.jbi.2024.104731.Peer-Reviewed Original Research
2023
Biomedical relation extraction with knowledge base–refined weak supervision
Yoon W, Yi S, Jackson R, Kim H, Kim S, Kang J. Biomedical relation extraction with knowledge base–refined weak supervision. Database 2023, 2023: baad054. PMID: 37551911, PMCID: PMC10407973, DOI: 10.1093/database/baad054.Peer-Reviewed Original ResearchChemical identification and indexing in full-text articles: an overview of the NLM-Chem track at BioCreative VII
Leaman R, Islamaj R, Adams V, Alliheedi M, Almeida J, Antunes R, Bevan R, Chang Y, Erdengasileng A, Hodgskiss M, Ida R, Kim H, Li K, Mercer R, Mertová L, Mobasher G, Shin H, Sung M, Tsujimura T, Yeh W, Lu Z. Chemical identification and indexing in full-text articles: an overview of the NLM-Chem track at BioCreative VII. Database 2023, 2023: baad005. PMID: 36882099, PMCID: PMC9991492, DOI: 10.1093/database/baad005.Peer-Reviewed Original ResearchAutomatic Creation of Named Entity Recognition Datasets by Querying Phrase Representations
Kim H, Yoo J, Yoon S, Kang J. Automatic Creation of Named Entity Recognition Datasets by Querying Phrase Representations. 2023, 7148-7163. DOI: 10.18653/v1/2023.acl-long.394.Peer-Reviewed Original Research
2022
Full-text chemical identification with improved generalizability and tagging consistency
Kim H, Sung M, Yoon W, Park S, Kang J. Full-text chemical identification with improved generalizability and tagging consistency. Database 2022, 2022: baac074. PMID: 36170114, PMCID: PMC9518746, DOI: 10.1093/database/baac074.Peer-Reviewed Original Research
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