2023
Genomic characterization of SARS-CoV-2 from an indigenous reserve in Mato Grosso do Sul, Brazil
de Oliveira L, de Rezende I, Navarini V, Marchioro S, Torres A, Croda J, Croda M, Gonçalves C, Xavier J, de Castro E, Lima M, Iani F, Adelino T, Aburjaile F, Demarchi L, Taira D, Zardin M, Fonseca V, Giovanetti M, Andrews J, Alcantara L, Simionatto S. Genomic characterization of SARS-CoV-2 from an indigenous reserve in Mato Grosso do Sul, Brazil. Frontiers In Public Health 2023, 11: 1195779. PMID: 37965526, PMCID: PMC10641392, DOI: 10.3389/fpubh.2023.1195779.Peer-Reviewed Original ResearchConceptsSARS-CoV-2 lineagesIntroduction eventsCharacterization of SARS-CoV-2Nanopore sequencing platformSARS-CoV-2 positive samplesMultiple SARS-CoV-2 variantsMultiple introduction eventsPhylogenetic reconstructionPhylogenetic dataGenome sequenceSequencing platformsGenomic characterizationSARS-CoV-2Genomic surveillanceSARS-CoV-2 variantsLineagesMato GrossoMortality rateViral dynamicsIndigenous populationCo-circulationPrevalence of malesMidwestern BrazilPositive samplesIndigenous mobilization
2021
Evolutionary Dynamics and Dissemination Pattern of the SARS-CoV-2 Lineage B.1.1.33 During the Early Pandemic Phase in Brazil
Resende P, Delatorre E, Gräf T, Mir D, Motta F, Appolinario L, da Paixão A, da Fonseca Mendonça A, Ogrzewalska M, Caetano B, Wallau G, Docena C, dos Santos M, de Almeida Ferreira J, Sousa E, da Silva S, Fernandes S, Vianna L, da Costa Souza L, Ferro J, Nardy V, Santos C, Riediger I, do Carmo Debur M, Croda J, Oliveira W, Abreu A, Bello G, Siqueira M. Evolutionary Dynamics and Dissemination Pattern of the SARS-CoV-2 Lineage B.1.1.33 During the Early Pandemic Phase in Brazil. Frontiers In Microbiology 2021, 11: 615280. PMID: 33679622, PMCID: PMC7925893, DOI: 10.3389/fmicb.2020.615280.Peer-Reviewed Original ResearchPublic health interventionsHealth interventionsEarly pandemic phaseContinuous genomic surveillanceSARS-CoV-2 lineagesEffective reproductive numberLow prevalenceModerate prevalenceViral transmissionSARS-CoV-2 genomePandemic phaseWhole viral genomeGenomic surveillanceDissemination patternsAir travel restrictionsPrevalenceReproductive numberInterventionRio de JaneiroViral genomeBrazilian strainsPhylodynamic analysisPrevious studiesEpidemic dynamics