2023
AutoCriteria: a generalizable clinical trial eligibility criteria extraction system powered by large language models
Datta S, Lee K, Paek H, Manion F, Ofoegbu N, Du J, Li Y, Huang L, Wang J, Lin B, Xu H, Wang X. AutoCriteria: a generalizable clinical trial eligibility criteria extraction system powered by large language models. Journal Of The American Medical Informatics Association 2023, 31: 375-385. PMID: 37952206, PMCID: PMC10797270, DOI: 10.1093/jamia/ocad218.Peer-Reviewed Original ResearchConceptsLanguage modelInformation extraction systemOverall F1 scoreCriteria informationF1 scoreManual annotationScalable solutionContextual informationComplex scenariosContextual attributesExtraction systemReal-world settingsSystem evaluationModeling capabilitiesClinical trial protocol documentsInformationProtocol documents
2020
Conversational ontology operator: patient-centric vaccine dialogue management engine for spoken conversational agents
Amith M, Lin R, Cui L, Wang D, Zhu A, Xiong G, Xu H, Roberts K, Tao C. Conversational ontology operator: patient-centric vaccine dialogue management engine for spoken conversational agents. BMC Medical Informatics And Decision Making 2020, 20: 259. PMID: 33317519, PMCID: PMC7734717, DOI: 10.1186/s12911-020-01267-y.Peer-Reviewed Original ResearchConceptsDialogue engineUser-centric systemOntology-based systemQuestion-answering systemManagement engineSoftware engineQuestion AnsweringConversational agentsDialogue interactionCompetency questionsContextual informationConsumer usersCore taskAccuracy scoresConsumer questionsEngineConversational flowHealth informationSimulation trialsInformationUsersFuture plansNext stepOntologyWizardNamed Entity Recognition from Table Headers in Randomized Controlled Trial Articles
Wei Q, Zhou Y, Zhao B, Hu X, Mei Q, Tao C, Xu H. Named Entity Recognition from Table Headers in Randomized Controlled Trial Articles. 2020, 00: 1-2. DOI: 10.1109/ichi48887.2020.9374323.Peer-Reviewed Original ResearchTable headersEntity recognitionDeep learning-based approachBiomedical text miningLearning-based approachNamed Entity RecognitionInformation extractionBiomedical entitiesF1 scoreText miningUnstructured natureBiomedical articlesContextual informationComputational applicationsHeaderSemantic complexityBetter performanceCorpusRecognitionInformationMiningApplicationsImportant informationComplexityBiomedical research