2007
The developmental genetics of homology
Wagner GP. The developmental genetics of homology. Nature Reviews Genetics 2007, 8: 473-479. PMID: 17486120, DOI: 10.1038/nrg2099.Peer-Reviewed Original ResearchA stochastic model for the evolution of transcription factor binding site abundance
Wagner GP, Otto W, Lynch V, Stadler PF. A stochastic model for the evolution of transcription factor binding site abundance. Journal Of Theoretical Biology 2007, 247: 544-553. PMID: 17475285, DOI: 10.1016/j.jtbi.2007.03.001.Peer-Reviewed Original Research
2005
The “Fish-Specific” Hox Cluster Duplication Is Coincident with the Origin of Teleosts
Crow KD, Stadler PF, Lynch VJ, Amemiya C, Wagner GP. The “Fish-Specific” Hox Cluster Duplication Is Coincident with the Origin of Teleosts. Molecular Biology And Evolution 2005, 23: 121-136. PMID: 16162861, DOI: 10.1093/molbev/msj020.Peer-Reviewed Original ResearchConceptsHox cluster duplicationsCluster duplicationHox genesHox clustersTeleost lineageDifferent teleost lineagesHox gene complementOrigin of teleostsRecent common ancestorDuplication eventsGene complementTeleost radiationGene genealogiesStem lineageCommon ancestorGnathostome vertebratesBasal actinopterygiansLineagesZebrafishTeleostsGenesDuplicationFuguSharksFish
2000
Hox cluster genomics in the horn shark, Heterodontus francisci
Kim C, Amemiya C, Bailey W, Kawasaki K, Mezey J, Miller W, Minoshima S, Shimizu N, Wagner G, Ruddle F. Hox cluster genomics in the horn shark, Heterodontus francisci. Proceedings Of The National Academy Of Sciences Of The United States Of America 2000, 97: 1655-1660. PMID: 10677514, PMCID: PMC26491, DOI: 10.1073/pnas.030539697.Peer-Reviewed Original ResearchConceptsHox gene clustersHox clustersHOXA clusterGene clusterHeterodontus francisciVertebrate body planHorn sharkGene-coding sequencesDivergence timesEvolutionary historyBody planHoxD clusterEvolutionary significanceSequence motifsVertebrate phylogenyDevelopmental processesGenetic entitiesStructural similarityControl motifsSharksCluster organizationMotifPhylogenyGenomicsNoncoding
1996
Evidence for Four Hox Clusters in the KillifishFundulus heteroclitus(Teleostei)
Misof B, Wagner G. Evidence for Four Hox Clusters in the KillifishFundulus heteroclitus(Teleostei). Molecular Phylogenetics And Evolution 1996, 5: 309-322. PMID: 8728389, DOI: 10.1006/mpev.1996.0026.Peer-Reviewed Original ResearchMeSH KeywordsAmino Acid SequenceAnimalsBase SequenceBiological EvolutionDNA PrimersFishesGenes, HomeoboxHomeodomain ProteinsHumansKillifishesKineticsMiceModels, GeneticMolecular Sequence DataMultigene FamilyPhylogenyPolymerase Chain ReactionProbabilitySequence Homology, Amino AcidSequence Homology, Nucleic AcidConceptsHox clustersMammalian Hox genesTeleost Fundulus heteroclitusDiploid teleostsHox genesHomeobox sequencesPCR surveySequence comparisonLower vertebratesFundulus heteroclitusCognate groupsFirst evidenceSequenceOrthologsCluster AVertebratesTeleostsGenesNumber of representativesHeteroclitusClustersHumansMiceFragmentsRepresentativesPCR‐survey of hox‐genes of the zebrafish: New sequence information and evolutionary implications
Misof B, Blanco M, Wagner G. PCR‐survey of hox‐genes of the zebrafish: New sequence information and evolutionary implications. Journal Of Experimental Zoology 1996, 274: 193-206. PMID: 8882497, DOI: 10.1002/(sici)1097-010x(19960215)274:3<193::aid-jez6>3.0.co;2-j.Peer-Reviewed Original ResearchConceptsHox gene complementGene complementPCR surveyHox gene sequencesZebrafish Danio rerioNumber of genesNew sequence informationInsufficient sequence variationZebrafish genesHox genesPutative genesEvolutionary implicationsBony fishDanio rerioHuman genomeGene sequencesSequence variationSequence informationCognate groupsGenesType sequenceSequenceGenomeRerioFragments